Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14330 684 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G21270 143 / 1e-35 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) AT4G05190 141 / 4e-35 ATK5 kinesin 5 (.1) AT2G37420 136 / 2e-33 ATP binding microtubule motor family protein (.1) AT3G45850 134 / 2e-32 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 131 / 1e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G36200 130 / 3e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G27180 128 / 6e-31 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT2G22610 125 / 7e-30 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G18550 125 / 7e-30 ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021167 [exp] 1031 / 0 AT4G14330 788 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025304 [exp] 139 / 5e-34 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10024429 [exp] 137 / 1e-33 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10007629 [exp] 133 / 3e-32 AT4G21270 975 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10018384 [exp] 132 / 7e-32 AT4G21270 989 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10014216 [exp] 131 / 1e-31 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021340 [exp] 129 / 5e-31 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 129 / 5e-31 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10013714 [exp] 129 / 6e-31 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G169000 [exp] 755 / 0 AT4G14330 915 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G069400 [exp] 754 / 0 AT4G14330 863 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G031200 [exp] 137 / 7e-34 AT4G21270 1109 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.006G082900 [exp] 136 / 2e-33 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.004G031600 [exp] 133 / 2e-32 AT4G21270 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.001G233700 [exp] 133 / 3e-32 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.011G131900 [exp] 131 / 8e-32 AT5G54670 1058 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.001G416300 [exp] 129 / 3e-31 AT5G54670 1090 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.006G210700 [exp] 129 / 6e-31 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 129 / 7e-31 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10011804 pacid=23165527 polypeptide=Lus10011804 locus=Lus10011804.g ID=Lus10011804.BGIv1.0 annot-version=v1.0 ATGGCTCCCACTCCGTCTTCTTTCAAACAGAACCACACCCACAACCCCTTCAAGACTCCCCAATCTAAACACCGCCTCAATTTCAATTCTTCCAGAACCC CAAACCATCACCCCTCTCCTAACCCTAACTCGGCGCTCAAAGAAAACCCTCCAATCGACCACCCAATTGAAGTCATTGGCCGCATCAGGGATTTCCCAGA TCGGAAGGAGAAGCCAGCTCCGGTGTTGAGCGTCACCGCAGATGGCCAGACACTCAGAGTCCGTGCGGAAATCGGCTACAGGGACTTCACCTTGGATGGG GTTTCTTTCTCGGAGAAAGAAGATCTTGATGGGTTCTACCGGAAATTCGTTAAGTCTAGGATCAATGGGGTGAAATTGGGGGAGAAGTGTACGATTATGA TGTACGGGCCCACAGGTTCTGGGAAGAGCCACTCCATGTTCGGGAGCCCTAAGCAGCCGGGGATAGTTTACAAGGCGCTCAAGGATATACTTGGAGAAAC TGAAGAAGGGGTTGATGGTGGAGAGAAGCTGGGAATGGCTACTTTTGTTCAGGTCACTGTTCTGGAGATTTACAACGAGGAGATTTATGATCTCTTGTCA ACTAATGGTGGTGGTGGGGGGTTTGGAATCGGCTGGCCTAAAGGTGGGAGTGCGTCTAAGGCAAGACTTGAAGTGATGGGAAAGAAGGCCAAAAATGCTA CTTTCATATCTGGCTCTGAAGCTAACAAAATTCTGAGAGAGATTCAGAAGGTGGAGAAGAAAAGGATAGTTAAGAGCACCTTGTGTAATGAACGAAGTTC CAGGAGTCACTGCATGATAATTCTGGATGTTCCAACCGTGGGAGGTCGCCTTATGCTTGTGGACATGGCAGGGTCAGAGAACATTGAACAAGCAGGGCAA AGTGGTTTTGAGGCTAAAATGCAGACAGCAAAGATTAATCAAGGGAATATAGCATTGAAAAGAGTGGTTGAGTCGATTGCAAATGGAGATTCCCATGTTC CATTCCGGGACAGCAAGTTGACCATGCTGCTCCAGGATTCATTTGAAGATGATAAGTCAAAGATTCTAATGATTCTTTGTGCAAGTCCAGATCCGAAGGA GATCCACAAGACAATCTGTACCCTTGAATATGGAGCAAAAGCAAAGTGCATTGTCCGTGGCCCTCATACTCCGATCAAAGACAGTGAGGAATCAGGTGCA GATATGTTGGGATCCAGGGTAGCAGCCATGGACCAGTTTATCTACAAGCTACAGTTGGAAAACAAGCTCAAGGAGAAAGAGAGGAACGAGGCACACAAAC AACTCATGGAGAAAGAGGAAGAAATGGCTGCTTTAAGAAAACAGATTGCAGTGAGGGAAGCTGCTGTAGCACCAAGTGAAGAAGAGATCAACGCCAAGGT GAATGAGCGGACAATGATGATGAAACTCGAATTGGAAAGGAAGTCGGAAGAATGTAAGAAGGCTGCTGAGAAATGTTTCGAGATGGAGAAGAGGAGGATG GAAGAGAAGATATTGGAGCAGCAACAGGAAGTCGAAATGCTAAGGAGACGACTGCAAGAGATCGAACTGGAAAAGGCAAGTCTTCCTCTAGAGAAGACTG CTGCAAAAGATGTGGATGATTGTTGTCGCAGCAGTTTCACAAGTAGACTGTTGGGGGCTTGTGGGGATGATGAGGCAGGGATGGTGAAGTCTATGGACCT CGACATGGGCGATCAGGAAGTATTTGTTCGCGAGGTGAAGTTTGTAGACACAGCAGAGAAGAGGATGAACAGGAACAGAAGGTGGAAGAAGAAGTGGAAA AGAAGGTTATAG
AA sequence Show only first row Show all	>Lus10011804 pacid=23165527 polypeptide=Lus10011804 locus=Lus10011804.g ID=Lus10011804.BGIv1.0 annot-version=v1.0 MAPTPSSFKQNHTHNPFKTPQSKHRLNFNSSRTPNHHPSPNPNSALKENPPIDHPIEVIGRIRDFPDRKEKPAPVLSVTADGQTLRVRAEIGYRDFTLDG VSFSEKEDLDGFYRKFVKSRINGVKLGEKCTIMMYGPTGSGKSHSMFGSPKQPGIVYKALKDILGETEEGVDGGEKLGMATFVQVTVLEIYNEEIYDLLS TNGGGGGFGIGWPKGGSASKARLEVMGKKAKNATFISGSEANKILREIQKVEKKRIVKSTLCNERSSRSHCMIILDVPTVGGRLMLVDMAGSENIEQAGQ SGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMILCASPDPKEIHKTICTLEYGAKAKCIVRGPHTPIKDSEESGA DMLGSRVAAMDQFIYKLQLENKLKEKERNEAHKQLMEKEEEMAALRKQIAVREAAVAPSEEEINAKVNERTMMMKLELERKSEECKKAAEKCFEMEKRRM EEKILEQQQEVEMLRRRLQEIELEKASLPLEKTAAKDVDDCCRSSFTSRLLGACGDDEAGMVKSMDLDMGDQEVFVREVKFVDTAEKRMNRNRRWKKKWK RRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14330			P-loop containing nucleoside t...		Lus10011804 [exp]	0	1
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10003800 [exp]	2.8	0.9703
AT1G65710			unknown protein		Lus10010952 [exp]	2.8	0.9702
AT5G26910			unknown protein		Lus10037725 [exp]	3.9	0.9666
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10038729 [exp]	4.2	0.9692
AT4G14330			P-loop containing nucleoside t...		Lus10021167 [exp]	4.6	0.9655
AT1G72250			Di-glucose binding protein wit...		Lus10013714 [exp]	4.9	0.9677
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10037691 [exp]	6.9	0.9654
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10010519 [exp]	8.8	0.9636
					Lus10037590 [exp]	8.8	0.9665
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10039033 [exp]	9.5	0.9600

Compare expression of checked genes

Lus10011804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.