Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33470 323 / 7e-114 ATGLTP1, GLTP1 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) AT1G21360 127 / 3e-36 GLTP2 glycolipid transfer protein 2 (.1) AT3G21260 122 / 4e-34 GLTP3 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021169 [exp] 403 / 4e-145 AT2G33470 334 / 3e-118 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10003626 [exp] 254 / 1e-85 AT2G33470 242 / 3e-81 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10008244 [exp] 219 / 2e-72 AT2G33470 216 / 1e-71 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10029765 [exp] 124 / 2e-35 AT3G21260 212 / 9e-70 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10018917 [exp] 124 / 5e-35 AT3G21260 229 / 3e-76 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10028618 [exp] 121 / 8e-34 AT1G21360 224 / 6e-74 glycolipid transfer protein 2 (.1) Lus10042793 [exp] 120 / 2e-31 AT1G21370 486 / 2e-170 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069600 [exp] 359 / 9e-128 AT2G33470 332 / 3e-117 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.008G168800 [exp] 320 / 2e-112 AT2G33470 315 / 1e-110 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.002G035600 [exp] 270 / 8e-93 AT2G33470 273 / 2e-94 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.005G188600 [exp] 134 / 3e-39 AT1G21360 259 / 3e-88 glycolipid transfer protein 2 (.1) Potri.002G071100 [exp] 124 / 3e-35 AT1G21360 253 / 8e-86 glycolipid transfer protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [flax] [poplar] GLTP Glycolipid transfer protein (GLTP)
Representative CDS sequence Show only first row Show all	>Lus10011806 pacid=23165551 polypeptide=Lus10011806 locus=Lus10011806.g ID=Lus10011806.BGIv1.0 annot-version=v1.0 ATGGCCGGAGAAGGAACTATTTTCGCTCCCTCACTGGAAGGGATGAAGCATGTCAAATGCGAGCAAGGGGAAATGCTCACCAAGCCTTTCCTCGATGTCT GCAAATTGATCCTTCCCGTGATCGATAAGTTTGGAGCTGCTTTGGCCATTGTGAAATCTGATATTGGCGGCAATATAACGAGATTGGAAACCAAATATTC TACTGATCCTACAAAATACAAGCTCCTTTACACTATGATTCAAGAGGAGGTTCAAGCAAAAACGGCAAAAGGATCATCTAGCTGTACTAATGGTCTGCTT TGGTTAACCAGAGCTATGGATTTCCTGGTGGAACTGTTCCGCAATTTACTGACACATCAAGATTGGACAATGAGCCAAGCATGTACAGATTCATACTGCA AGACCCTGAAAAAGTTCCATGGCTGGCTTGCTAGTTCAAGTTTCACCGTTGCAATGAAGCTTGGTCCTGACAGAAAGAAGTTCATGGAAGTGGTTTCTGG GACAGGGGACATTAATGCTGACATTGAAAAGTTCTGTTCCACCTTTTCTCCGTTCCTTGCAGAGAATCACAAGTTCCTGGTACGATTTTCTCCCGTCTCT GTAACATCTTCCTCGTGTCCAACACTGGCTAGTGTTGGCATGGATGACCTGAAAGCTTCCTAG
AA sequence Show only first row Show all	>Lus10011806 pacid=23165551 polypeptide=Lus10011806 locus=Lus10011806.g ID=Lus10011806.BGIv1.0 annot-version=v1.0 MAGEGTIFAPSLEGMKHVKCEQGEMLTKPFLDVCKLILPVIDKFGAALAIVKSDIGGNITRLETKYSTDPTKYKLLYTMIQEEVQAKTAKGSSSCTNGLL WLTRAMDFLVELFRNLLTHQDWTMSQACTDSYCKTLKKFHGWLASSSFTVAMKLGPDRKKFMEVVSGTGDINADIEKFCSTFSPFLAENHKFLVRFSPVS VTSSSCPTLASVGMDDLKAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10011806 [exp]	0	1
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Lus10022947 [exp]	2.2	0.8322
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10018427 [exp]	3.2	0.8208
AT2G31440			unknown protein		Lus10025574 [exp]	5.7	0.8300
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10017116 [exp]	6.6	0.8272
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	13.5	0.8313
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10011846 [exp]	15.3	0.8185
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	16.3	0.8180
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	17.4	0.8011
AT3G49720			unknown protein		Lus10039648 [exp]	19.1	0.7942
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10021144 [exp]	19.8	0.7580

Compare expression of checked genes

Lus10011806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.