Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20450 221 / 1e-75 Ribosomal protein L14 (.1) AT4G27090 219 / 5e-75 Ribosomal protein L14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021170 [exp] 261 / 1e-91 AT2G20450 218 / 1e-74 Ribosomal protein L14 (.1) Lus10024918 [exp] 254 / 8e-89 AT2G20450 224 / 3e-77 Ribosomal protein L14 (.1) Lus10008246 [exp] 253 / 2e-88 AT2G20450 228 / 8e-79 Ribosomal protein L14 (.1) Lus10003627 [exp] 154 / 6e-50 AT4G27090 139 / 2e-44 Ribosomal protein L14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G168600 [exp] 234 / 3e-81 AT4G27090 230 / 2e-79 Ribosomal protein L14 (.1) Potri.002G035700 [exp] 231 / 5e-80 AT4G27090 234 / 8e-81 Ribosomal protein L14 (.1) Potri.005G227300 [exp] 231 / 8e-80 AT4G27090 235 / 3e-81 Ribosomal protein L14 (.1) Potri.010G069900 [exp] 228 / 8e-79 AT4G27090 228 / 2e-78 Ribosomal protein L14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF01929 [flax] [poplar] Ribosomal_L14e Ribosomal protein L14
Representative CDS sequence Show only first row Show all	>Lus10011807 pacid=23165548 polypeptide=Lus10011807 locus=Lus10011807.g ID=Lus10011807.BGIv1.0 annot-version=v1.0 ATGGGTTTCAAAAGATACGTCGAGATCGGACGCGTTGCTCTGATCAACTACGGGAAGGACTACGGAAAGCTCGTTGTCATTGTCGATGTCGTCGACCAAA ATCGGGCTCTAGTTGATTCACCTGATATGGTTAGGAGCCAAATCAACTTCAAGAGGCTTACTCTCACCGACATCAAGATTGAGATTAACAGAGTTCCCAG GAAGAAGACTCTTATCGAAGCCATGGAGAAGGCTGATGTTAAAGGAAAGTGGGAGAACAGCTCTTGGGGCCGCAAGTTGATCGTTAAGCAGAGGAGGGCT GCTCTCACCGACTTCGACAGGTTCAAGGTTATGTTGGCAAAGATCAAGAGAGGAGGATTGATCAAGCAAGAGCTTGCCAAGCTGAAGAAGACTGCTGCTT AG
AA sequence Show only first row Show all	>Lus10011807 pacid=23165548 polypeptide=Lus10011807 locus=Lus10011807.g ID=Lus10011807.BGIv1.0 annot-version=v1.0 MGFKRYVEIGRVALINYGKDYGKLVVIVDVVDQNRALVDSPDMVRSQINFKRLTLTDIKIEINRVPRKKTLIEAMEKADVKGKWENSSWGRKLIVKQRRA ALTDFDRFKVMLAKIKRGGLIKQELAKLKKTAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20450			Ribosomal protein L14 (.1)		Lus10011807 [exp]	0	1
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10004220 [exp]	1.7	0.9789
AT1G67430			Ribosomal protein L22p/L17e fa...		Lus10006421 [exp]	3.5	0.9708
AT1G09590			Translation protein SH3-like f...		Lus10030607 [exp]	4.9	0.9662
AT1G48830			Ribosomal protein S7e family p...		Lus10023638 [exp]	5.9	0.9627
AT1G48830			Ribosomal protein S7e family p...		Lus10028789 [exp]	6.0	0.9628
AT3G06700			Ribosomal L29e protein family ...		Lus10016875 [exp]	6.9	0.9593
AT5G35530			Ribosomal protein S3 family pr...		Lus10030503 [exp]	7.5	0.9643
AT5G59850			Ribosomal protein S8 family pr...		Lus10023429 [exp]	7.6	0.9439
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10007805 [exp]	8.7	0.9637
AT2G43110			unknown protein		Lus10001158 [exp]	9.2	0.9342

Compare expression of checked genes

Lus10011807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.