Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43310 803 / 0 COP1-interacting protein-related (.1.2.3.4) AT4G27430 220 / 1e-58 CIP7 COP1-interacting protein 7 (.1.2) AT1G61100 212 / 6e-57 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) AT3G14172 129 / 5e-30 unknown protein AT1G72410 111 / 2e-24 COP1-interacting protein-related (.1.2) AT1G17360 101 / 2e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021172 [exp] 2173 / 0 AT5G43310 834 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10043092 [exp] 208 / 1e-54 AT4G27430 540 / 2e-175 COP1-interacting protein 7 (.1.2) Lus10011217 [exp] 198 / 3e-52 AT1G61100 475 / 5e-156 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10032660 [exp] 196 / 1e-50 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10018471 [exp] 193 / 1e-50 AT1G61100 474 / 1e-155 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10013178 [exp] 128 / 2e-29 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10008140 [exp] 125 / 1e-28 AT1G72410 585 / 0.0 COP1-interacting protein-related (.1.2) Lus10000225 [exp] 109 / 1e-25 AT4G21760 189 / 1e-55 beta-glucosidase 47 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G168300 [exp] 1162 / 0 AT5G43310 891 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.010G070200 [exp] 1155 / 0 AT5G43310 892 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.011G046900 [exp] 227 / 3e-61 AT1G61100 484 / 6e-158 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.004G038300 [exp] 221 / 3e-59 AT1G61100 462 / 1e-149 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.001G403700 [exp] 202 / 1e-52 AT4G27430 366 / 6e-109 COP1-interacting protein 7 (.1.2) Potri.011G122900 [exp] 199 / 1e-51 AT4G27430 649 / 0.0 COP1-interacting protein 7 (.1.2) Potri.001G164900 [exp] 124 / 2e-28 AT3G14172 521 / 1e-161 unknown protein Potri.003G070400 [exp] 123 / 4e-28 AT3G14172 544 / 3e-170 unknown protein Potri.019G064000 [exp] 69 / 3e-11 AT3G14172 99 / 8e-21 unknown protein Potri.013G091900 [exp] 67 / 9e-11 AT3G14172 122 / 7e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011809 pacid=23165536 polypeptide=Lus10011809 locus=Lus10011809.g ID=Lus10011809.BGIv1.0 annot-version=v1.0 ATGAGGTCTTCAACTAGACTTCACTCTGCTGTTTTTCAGCTTACACCTACTCGAACAAGGTGTGACTTGGTTATAAATGCCAATGGGAAGACGGAAAAGA TAGCTACTGGGCTGGTGACCCCATTTCTTGCACATTTGAAGGCTGCCCAAGAACAAATGGACAAGGGTGGTTACTCTATTAGTCTTGTGCCCGAGAATGG AAGTGATGCTACATGGTTTACAAAGGAAACTATTGAAAGGTTTGTACGATTTGTTAGCACCCCGGAGATATTGGAACGTGTTTATACTTTAGAATCAGAG ATTCTACAGATGGAAGAGGCAATTGCTACACAAAGCAGCAGTGACCTTGGCAATAGCATGGTTGAAGATCACCACCCAAAACCTTTGGAACGAAATGAAG GTAGCAAGCCTTTACTGGATTCCAGTGAAGAAAAAGCTATTGTACTTTATCAACCTGATGCACATCCACCTGAAGCAAATGAGACGCCAGCAGAGTCAAG ACTCCAGCTTAAGAAAGTTCTGGAGACACGTAGAACTGTGTTACAGAAAGAGCAAGGGATGGCATTTGCCCGTGCAGTAGCAGCAGGTTTTGATGTTGAT CAAATGGCGCCTTTAATGGATGCATGTTTGAAATTCAAGGATTTGTGGAAAAGGAAGCATGAAAGTGGCCAATGGGTCGAAATTGAAGCAGCTGAAGCAA TGAATAGCCAGGCAGAATTCTCCTTGGTTAATTCATCTGGCATTATTCTTGCAAATGGAGCCAACAAGCAATGGCCTGAAAGTTCTGACAACAATGGGAA ATCACATGGTTCGGATGAAAATCCTGGCATGGATCAGTCACCAATGCAAGGTCACCAAGGATATTTCCAGGGCCAGATGCCACATCCAATGTTCTCTTCT TGGCCTATCAATTCTCCTCCCGGTACATTGCCTGTTGTTCAGGGAATTCCCATGCAAGGCATCCCTTATTACCAGAACTATCCCGGGACCCCTTTTGTTC AGCAACCGTATCTTCCAGGAGAAGATAACAGAGTGAACAGTGGTCAGCGAGTGAGACGTAGGCGACATTCCATGGATTGCGAGGATACTGAAGCTTGGGA TGTTGATGCTGCCAGGACTAGATCCCAAGATGATGCAGAATTGGACAATGACACTTCCGGAAAAGGCGGTAGATCCTCTGGTAGAAAAAAGAGGTCTGGA AAGGTTGTCATACGTAACATTAACTACATCACTTCCAATCAGGACGTCTCAGACAACGAATCCCAATCTGCTTCTGGTTCTGATGACGAAGAGCAAGATG GATATTCCCCAGCCGGGAATAATTCAAGAATCAAACAGAAGAAATCTACTAGATCTTCTAAAAGAGAAGACAGTCATCTAAATACAACTACTAATAAGGA GGGAGATGACGGGCACTGGCAAGCATTTCAAAACTATTTGCTGAAAGATGCTGATGAAGCTGAACATGACAACGGGGGAGATATGTTTGCAATGGAAAGG GGAACACGTACAAAAAGGCGACAAAATGCTGTCGGAGGAGATGATCCCTTATCCGTTGGTGGACGAGATGGTTACAGTCAAGATGGTGAGATGGCAGACG TACAGAGAATCAGTGGCAGCTTGACCCGGGTGGGTAGAGGATCAGCTGATGATTTCATAGTTAATGGGCATAGAAATCACTCTGGGTATGATGCGGATGC CCTTGCTTTGAACAAATACGAGAACAGAAATACTGATTTGGATAGGAAGTCACCACAGTACATGGATGATGGCTCTCGCATTGTTCCATTAAGGTCACCT TTGCAATATGAAGGTGAAACACGTGGAAACAATACTATTAATATGGATTCTGAGTTGTCATCAGCTAGGCCAGAAGTGACTGGAGCCATTATCAAATATG AGCCAGATGATTTAACTTTGATGCCTGAACGTGAGATGGAAAGAGGGTCTGTTGGTTATGATCCTGCTTTAGATTATGATATGGAAACTCATATTTCTGC TAATGGTATTAAGAAAGGTAAAAAGGTAGAGAATGATCCAAAGCCAGGCACAAGATCGAAACGCACACCGGATTCTTCAGACAAGAAAAAGACAGCGGGA CCAATCAGAAAGGGAAAACCTTCGAAGTTGAGTCCATTAGATGAAGCTAAGGCACGAGCTGAAAAGCTAAGAAGCTTCAAAGCCGATCTCCAGAAAATGA AGAAGGAGAGGGAAGAAGAAGAAATGAAACGACTTGCATCTTTGAAGCAACAAAGGCAAAAGAGAATTTCCTCAAGGGGGACTTCGATTCCTGCTCCGTC AACCCCTCAGCAAACCAGGAAATCATTGCCTACAAAACTTTCACCAATTTCTCACAAGGGGTCTAAGTTTAGTGATTCGGAGCCTGGACCATCATCTCCT CTACAAAGATCATCCATAAAAGTTGTTCCTGCAGGAACTGGTCCTTCTGTCAAAGCCTCCAAGTCAAGCAAGTTGAGTACTGGAAGCTCATCATCTGCTG GAAATAGACTGACCAGATCAGTGTCATCATTGTCCGGGTCGAAGGTGGAGGATGGTCCTATAACCGCTGATACAAAAGCATCCATGGCACGTATCAGAAG ATTATCTGAGCCCAAAGTAATAAGCGGCAGCAACCTTCGTGTCGCTACAACGAAGCCACGGAAAGTTGAACAGACACCATCTGCTGTTAAAGCAAAGAGT ACCCCGCCACCATCGAAACGGAAACTATCAAATGGGCCTGAAACAAAGAAGATATCAGCGATTGTAAACTATGATAAAAGCAAAGCTGCATCGCTTCCAG AGCTGAAAACAAGAACCCCAAAAGCATCTGATGTTGTCGAAAATGGGTCCAAGCCTCTGGTGAGTTCTGAAAGTTCTGAATTGGAGAAGATTGTTGTAAT ACCTGACTGTGAGACGTCTTCTGTTCCCACATCACACGCCTTAGAAGAAAGTATCAGAGTACAAGATTCGAACCCCAATCTGCATAACACAGTGGTGAAG CCTGATATTGTAGCAGAAGAACCTAGACTAGTTCAGGCTGCAACGGTGGCAGTAAAGGAATTACCGAAGGGTTCGAGCAGCAGCATTGCTGAAAAACCAT ACCAGCCTCCATTTGCCAGGAACTCATCTCTTGAAGATCCATGCACTAGGAACTCGGAGTATGGGAAAGCACCTCCGACGAATGTACTGCCAACAACAGC AACGATTGGTACTGACACAATGAAAGTTCGCGTGTCAGATTCTTCGAGCCTGAAATTAGAGAAGATCCCTGAAGTTGCTGACAAGTCTGAAACGAAAGAA TCGTCAAAGGGGTTTAGACGGCTGCTAAAGTTTGGAAGGAAAAGTCATGCAACAAATGACCGCAACTCTGAAGTGGATACTACGAGCGTCAAGAGTTTTG AGGGAAATGAAGGTGTTGCAAACACTACCACCTCTAACGAAGCTTTTACTCTGAAGAATCTCATCTCTCAAGATGAAACCCCTACTGCTGCAACTACACC TCAGAAATCTTCTCGACATTTCTCGCTGTTGTCACCCTTTCGGAGCAAGACTAGTGAAAAGAAGTTAACAGCGTGA
AA sequence Show only first row Show all	>Lus10011809 pacid=23165536 polypeptide=Lus10011809 locus=Lus10011809.g ID=Lus10011809.BGIv1.0 annot-version=v1.0 MRSSTRLHSAVFQLTPTRTRCDLVINANGKTEKIATGLVTPFLAHLKAAQEQMDKGGYSISLVPENGSDATWFTKETIERFVRFVSTPEILERVYTLESE ILQMEEAIATQSSSDLGNSMVEDHHPKPLERNEGSKPLLDSSEEKAIVLYQPDAHPPEANETPAESRLQLKKVLETRRTVLQKEQGMAFARAVAAGFDVD QMAPLMDACLKFKDLWKRKHESGQWVEIEAAEAMNSQAEFSLVNSSGIILANGANKQWPESSDNNGKSHGSDENPGMDQSPMQGHQGYFQGQMPHPMFSS WPINSPPGTLPVVQGIPMQGIPYYQNYPGTPFVQQPYLPGEDNRVNSGQRVRRRRHSMDCEDTEAWDVDAARTRSQDDAELDNDTSGKGGRSSGRKKRSG KVVIRNINYITSNQDVSDNESQSASGSDDEEQDGYSPAGNNSRIKQKKSTRSSKREDSHLNTTTNKEGDDGHWQAFQNYLLKDADEAEHDNGGDMFAMER GTRTKRRQNAVGGDDPLSVGGRDGYSQDGEMADVQRISGSLTRVGRGSADDFIVNGHRNHSGYDADALALNKYENRNTDLDRKSPQYMDDGSRIVPLRSP LQYEGETRGNNTINMDSELSSARPEVTGAIIKYEPDDLTLMPEREMERGSVGYDPALDYDMETHISANGIKKGKKVENDPKPGTRSKRTPDSSDKKKTAG PIRKGKPSKLSPLDEAKARAEKLRSFKADLQKMKKEREEEEMKRLASLKQQRQKRISSRGTSIPAPSTPQQTRKSLPTKLSPISHKGSKFSDSEPGPSSP LQRSSIKVVPAGTGPSVKASKSSKLSTGSSSSAGNRLTRSVSSLSGSKVEDGPITADTKASMARIRRLSEPKVISGSNLRVATTKPRKVEQTPSAVKAKS TPPPSKRKLSNGPETKKISAIVNYDKSKAASLPELKTRTPKASDVVENGSKPLVSSESSELEKIVVIPDCETSSVPTSHALEESIRVQDSNPNLHNTVVK PDIVAEEPRLVQAATVAVKELPKGSSSSIAEKPYQPPFARNSSLEDPCTRNSEYGKAPPTNVLPTTATIGTDTMKVRVSDSSSLKLEKIPEVADKSETKE SSKGFRRLLKFGRKSHATNDRNSEVDTTSVKSFEGNEGVANTTTSNEAFTLKNLISQDETPTAATTPQKSSRHFSLLSPFRSKTSEKKLTA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43310			COP1-interacting protein-relat...		Lus10011809 [exp]	0	1
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038742 [exp]	3.5	0.9196
AT1G11160			Transducin/WD40 repeat-like su...		Lus10018458 [exp]	4.9	0.9193
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10035940 [exp]	5.9	0.9118
AT5G43310			COP1-interacting protein-relat...		Lus10021172 [exp]	6.0	0.9151
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10003354 [exp]	8.5	0.9193
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10003599 [exp]	12.5	0.9044
AT4G24880			unknown protein		Lus10007295 [exp]	16.7	0.8550
AT3G07140			GPI transamidase component Gpi...		Lus10025918 [exp]	16.7	0.8947
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10038858 [exp]	17.9	0.9006
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Lus10019946 [exp]	18.8	0.9067

Compare expression of checked genes

Lus10011809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.