Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28850 781 / 0 Calcium-binding EF-hand family protein (.1.2) AT5G28900 780 / 0 Calcium-binding EF-hand family protein (.1) AT1G54450 771 / 0 Calcium-binding EF-hand family protein (.1) AT5G44090 757 / 0 Calcium-binding EF-hand family protein (.1) AT1G03960 703 / 0 Calcium-binding EF hand family protein (.1.2) AT5G18580 89 / 2e-18 FASS2, TON2, GDO, FS1, EMB40, FASS GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021174 [exp] 1057 / 0 AT5G28850 804 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10029614 [exp] 949 / 0 AT5G28850 792 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10027963 [exp] 935 / 0 AT5G28850 771 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10032772 [exp] 933 / 0 AT5G28850 778 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10008193 [exp] 922 / 0 AT5G28850 768 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10003628 [exp] 742 / 0 AT5G44090 775 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10008247 [exp] 724 / 0 AT5G44090 774 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10022907 [exp] 694 / 0 AT5G44090 737 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10024917 [exp] 692 / 0 AT5G44090 751 / 0.0 Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019500 [exp] 833 / 0 AT5G28850 885 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.013G047300 [exp] 828 / 0 AT5G28850 887 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.002G035800 [exp] 778 / 0 AT5G44090 814 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.005G227100 [exp] 743 / 0 AT5G44090 772 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.010G022300 [exp] 88 / 3e-18 AT5G18580 835 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.008G215300 [exp] 83 / 1e-16 AT5G18580 830 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011811 pacid=23165561 polypeptide=Lus10011811 locus=Lus10011811.g ID=Lus10011811.BGIv1.0 annot-version=v1.0 ATGGATATGGAAGGGGTGGTTTCAATGACTGATGTGGCGGCTTTCGACCCGGACATCCTCCAGTTACCGGAATTCTCACCTTTGGCCTTGAAAGCCAACT CTTCCCTCGCCGACCAACTTTTCTCCCAGTGGCTTTCCCTTCCTCATACTTCTCGATTGGCCAAATCTTTGCTTTCTGTGGCTAAGACTGGAGGTCCCCT GAACGCTGTTGGCAACTCCAGTAGTGCAAATGCTGGTTCCGGCGGTTCAATACCGTCCATGTTTCCTTCTGTCAGCACTCCACCGCTTTCCCCTCGTAGC GTCTCAGGTTCACCTCGTACTGTGAAACAGAGAGCTGGTCTTTCCTCTTTAGGTTCTCCCCTTAAATTAATCAAAGACCCCGTGCGAGAAGTCATACCTC AGTTCTACTTCAAAAATGGCCGCCCGCCTCCAGATGACACGAGACAGCAATGCTTGTTTGAAATTGATCAACATTTTTATGGTCACATGGATGGATTACA ATTAAATGAGTTTAAGTCAGCTGCAAAGGATATCTGCAAGCTTCCGTCTTTTTTTTCTTCCATATTGTTTAAAAGAATTGATGTCAATGGTGTTGGCATG GTGACAAGGGATCAGTTTATTGACTATTGGGTCAAAGGGAACTGCTTGACCATGGATTTAGCTACTCGAATGTATATCATTCTCAAACAACCAGATCGTG AATACCTAGCTCAGGAGGATTTCAGACCAGTGTTACGAGAAATTTTGGCCACTCATCCAGGATTAGAATTTTTACAGAGCACTCCAGAATTTCAGGAGAG ATATGCTGAAACGGTCATATACAGAATATTTCACTATGTAAATAGATCAGGAACTGGTCGTCTCACTCTCAAGGAGCTAAAGCGTTCAAACTTGATTGCT GCGATGCATCAAGTAGACGACGAAGAAGATATTAACAAAGTTCTAAGATACTTTTCTTATGAACACTTCTATGTCATATACTGCAAATTCTGGGAGCTTG ACACAGATAATGATTTCTTTATTGACAAAGAGAACCTTATCCGATATGGCAACCATGCTCTTACGTACAGGACTGTTGATAGAGTATTTTCTCAGGTGGC AAGAAAATTTAGGAGCAAGGTTGAAGGCAAGATGGGTTATGAAGATTTTGTCTACTTCATACTCTCAGAGGAGGATAAATCTTCTGAACCTGGCATAGAG TTCTGGTTTAATTGTATTGATCTGGATGCAAACGGTATCCTAACTTCCAACGAGATGCAGTTCTTTTATGAAGAACAGTTACATCGAATGAAGTGCATGG CTCAAGAGCCAGTCCTTTTTGAAGATATATTGTGCCAGATCATAGATATGATTGGACCAGAGACTGAAGGCCTCGTCACATTGCGTGATATGAAAAGAAC GAAACTTGCTGGCCATGTGTTCAACATTCTTTTCAATCTCAATAAGTTCATTGCCTTTGAAAGTCGAGATCCATTCCTAATTCGCCAGGAACGAGAGAAT CCAACTTTGACAGAGTGGGATCGGTTTGCACATAGAGAGTATATAAGGCTTTCGATGGAGGACGATGCAGAAGACGAGTCAAATGGAAGTGGAGATATCT GGGAATCTCTTGAGGCTCCCTTTTGA
AA sequence Show only first row Show all	>Lus10011811 pacid=23165561 polypeptide=Lus10011811 locus=Lus10011811.g ID=Lus10011811.BGIv1.0 annot-version=v1.0 MDMEGVVSMTDVAAFDPDILQLPEFSPLALKANSSLADQLFSQWLSLPHTSRLAKSLLSVAKTGGPLNAVGNSSSANAGSGGSIPSMFPSVSTPPLSPRS VSGSPRTVKQRAGLSSLGSPLKLIKDPVREVIPQFYFKNGRPPPDDTRQQCLFEIDQHFYGHMDGLQLNEFKSAAKDICKLPSFFSSILFKRIDVNGVGM VTRDQFIDYWVKGNCLTMDLATRMYIILKQPDREYLAQEDFRPVLREILATHPGLEFLQSTPEFQERYAETVIYRIFHYVNRSGTGRLTLKELKRSNLIA AMHQVDDEEDINKVLRYFSYEHFYVIYCKFWELDTDNDFFIDKENLIRYGNHALTYRTVDRVFSQVARKFRSKVEGKMGYEDFVYFILSEEDKSSEPGIE FWFNCIDLDANGILTSNEMQFFYEEQLHRMKCMAQEPVLFEDILCQIIDMIGPETEGLVTLRDMKRTKLAGHVFNILFNLNKFIAFESRDPFLIRQEREN PTLTEWDRFAHREYIRLSMEDDAEDESNGSGDIWESLEAPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28850			Calcium-binding EF-hand family...		Lus10011811 [exp]	0	1
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	1.0	0.9059
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006029 [exp]	2.0	0.9051
AT3G02065			P-loop containing nucleoside t...		Lus10020088 [exp]	2.4	0.8891
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	3.0	0.8931
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005142 [exp]	3.2	0.8615
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	3.7	0.8840
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018126 [exp]	5.7	0.8912
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10007673 [exp]	6.6	0.8598
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10003841 [exp]	6.9	0.8587
AT3G20720			unknown protein		Lus10011166 [exp]	6.9	0.8639

Compare expression of checked genes

Lus10011811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.