Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14340 654 / 0 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT3G23340 644 / 0 CKL10 casein kinase I-like 10 (.1) AT5G43320 637 / 0 CKL8 casein kinase I-like 8 (.1) AT1G04440 622 / 0 CKL13 casein kinase like 13 (.1) AT4G28540 618 / 0 CKL6, PAPK1 casein kinase I-like 6 (.1) AT1G03930 609 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G44100 602 / 0 CKL7 casein kinase I-like 7 (.1) AT4G26100 526 / 0 CKL1, CK1 casein kinase 1 (.1) AT1G72710 520 / 0 CKL2 casein kinase 1-like protein 2 (.1) AT5G57015 520 / 0 CKL12 casein kinase I-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021175 [exp] 844 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10042570 [exp] 638 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10022029 [exp] 637 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10024916 [exp] 625 / 0 AT4G14340 640 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10033913 [exp] 619 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10014661 [exp] 617 / 0 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1) Lus10000553 [exp] 607 / 0 AT3G23340 623 / 0.0 casein kinase I-like 10 (.1) Lus10022908 [exp] 603 / 0 AT4G28540 625 / 0.0 casein kinase I-like 6 (.1) Lus10006879 [exp] 526 / 0 AT1G72710 664 / 0.0 casein kinase 1-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G070400 [exp] 753 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.008G168100 [exp] 747 / 0 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.013G047200 [exp] 651 / 0 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.002G036000 [exp] 651 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.005G226900 [exp] 649 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.003G043500 [exp] 532 / 0 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 530 / 0 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 530 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 529 / 0 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G239900 [exp] 493 / 7e-173 AT4G28880 594 / 0.0 casein kinase I-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10011812 pacid=23165566 polypeptide=Lus10011812 locus=Lus10011812.g ID=Lus10011812.BGIv1.0 annot-version=v1.0 ATGGATCATGTAATTGCTTCCAAGTTCAAGCTGGGGCGGAAGATTGGAAGTGGATCTTTCGGTGAACTATATTTGGTTTTTGCTGTTCTGATGTTGGCTA GTTTGCTTATTGTTTGGCTTGTGTACTCTGTTTCAGCTGTTAACATACAGAGTGGAGAAGAAGTGGCTGTTAAGTTGGAATCTGTAAAGACCAAGCATCC TCAACTTCATTATGAGTCAAAGTTGTACATGCTCCTTCAAGGAGGAACTGGAATTCCTCATCTCAAATGGTTTGGAGTGGAAGGGGAGTACAATGTCATG GTTATTGACCTGCTGGGACCTAGTCTAGAAGACTTGTTTAATTATTGCAACCGCAAATTTACCTTGAAAACAGTTTTGATGCTTGCAGATCAACTTCTAA ACAGAGTTGAATACATGCATTCACGGGGTTTTCTTCACCGTGATATAAAGCCTGACAATTTCCTAATGGGCTTGGGGCGTAAGGCTAATCAGGTCTACAT CATTGACTATGGCCTTGCAAAAAAGTACAGGGATCTTCAAACACACAAGCACATACCATACAGGGAAAATAAGAATCTAACGGGTACTGCTCGTTATGCT AGTGTCAATACTCATCTTGGAGTTGAGCAAAGCAGAAGAGATGATCTTGAGTCTCTCGGATACGTTCTTATGTATTTCCTTAGGGGAAGCCTTCCATGGC AAGGACTGAAAGCCGGCACTAAGAAGCAGAAGTATGACAAAATCAGTGAGAAGAAGATGCTTACCCCAGTGGAGGTCCTTTGCAAAAACTATCCCTCTGA ATTCACGTCATATTTCCATTATTGCCGATCATTGCGATTTGAAGATAAGCCAGATTATTCATACCTGAAAAGGCTTTTCAGGGACTTGTTTATTCGAGAA GGGTACCAGTTTGATTATGTGTTTGACTGGACCATATTGAAGTACCCACAAATCGGGTCCAGCTCTAGGCAACGACCAAGTGTGAAACCTGCTGTAAATG CTGGAACATCTGGGGAAAGAGTAGATCAACCTCCAGTTCGAGAGATCCGAGATAGGTTGTCTGGTGTAGCTGAGTTATTTGTTAGGAGGAGTAGCTCTGG ACAAGTATACCGCGGGGATCAGTCACGGCACAGGTCTTCAGATGATGTGCAGCCTTCATCTAAAGATGTGCGCACCGATTCAGAAAGGCCCAGGTCATCA TCTCGAAATGGGAGCACATCAAAGAGGGCAGTGGTGTCAAGTAGCCGGCCAAGCTCATCTGGAGAGCCAAGCGACAGTAGGATGAGCAGACTGATGTCTA GCAGTAGTCGTCTGTCAACAACGCAAAGGGTTCAGCCTGGCTTTGAATCAAAATCATCCTCCTTCACTCGTGCCACAACATCGAGAGGGGGCCGTGATGA GACACTGAGGAGCTTGGAGCTACTGTCCATTGGTACAGGAAAGCGAAAATAA
AA sequence Show only first row Show all	>Lus10011812 pacid=23165566 polypeptide=Lus10011812 locus=Lus10011812.g ID=Lus10011812.BGIv1.0 annot-version=v1.0 MDHVIASKFKLGRKIGSGSFGELYLVFAVLMLASLLIVWLVYSVSAVNIQSGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGEYNVM VIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYA SVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPVEVLCKNYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIRE GYQFDYVFDWTILKYPQIGSSSRQRPSVKPAVNAGTSGERVDQPPVREIRDRLSGVAELFVRRSSSGQVYRGDQSRHRSSDDVQPSSKDVRTDSERPRSS SRNGSTSKRAVVSSSRPSSSGEPSDSRMSRLMSSSSRLSTTQRVQPGFESKSSSFTRATTSRGGRDETLRSLELLSIGTGKRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10011812 [exp]	0	1
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10028287 [exp]	1.4	0.8570
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Lus10006758 [exp]	3.7	0.8488
AT3G02300			Regulator of chromosome conden...		Lus10030712 [exp]	7.3	0.8152
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004597 [exp]	10.5	0.8146
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	11.0	0.8282
AT2G16980			Major facilitator superfamily ...		Lus10023994 [exp]	11.0	0.8328
AT3G03940			Protein kinase family protein ...		Lus10024261 [exp]	13.7	0.7906
AT1G77810			Galactosyltransferase family p...		Lus10006933 [exp]	14.1	0.8136
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10036067 [exp]	15.6	0.8321
AT5G22850			Eukaryotic aspartyl protease f...		Lus10005356 [exp]	16.9	0.7883

Compare expression of checked genes

Lus10011812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.