Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14350 886 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT3G23310 885 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G20470 801 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G03920 795 / 0 Protein kinase family protein (.1) AT1G30640 721 / 0 Protein kinase family protein (.1) AT4G33080 652 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT2G19400 635 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G09890 615 / 0 Protein kinase family protein (.1.2) AT1G48490 275 / 2e-81 Protein kinase superfamily protein (.1.2.3) AT5G62310 270 / 1e-79 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021176 [exp] 1003 / 0 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10033911 [exp] 828 / 0 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10003541 [exp] 826 / 0 AT2G20470 850 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10005707 [exp] 634 / 0 AT5G09890 853 / 0.0 Protein kinase family protein (.1.2) Lus10042650 [exp] 632 / 0 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2) Lus10031332 [exp] 274 / 1e-80 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10027196 [exp] 272 / 4e-80 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 271 / 7e-80 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10005470 [exp] 258 / 2e-76 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G167800 [exp] 955 / 0 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.010G070600 [exp] 942 / 0 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.005G226700 [exp] 867 / 0 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G036200 [exp] 841 / 0 AT2G20470 857 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.011G157000 [exp] 795 / 0 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.006G224800 [exp] 673 / 0 AT4G33080 832 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) Potri.006G146900 [exp] 654 / 0 AT2G19400 755 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G125800 [exp] 633 / 0 AT5G09890 828 / 0.0 Protein kinase family protein (.1.2) Potri.014G028900 [exp] 619 / 0 AT5G09890 796 / 0.0 Protein kinase family protein (.1.2) Potri.012G044700 [exp] 280 / 5e-83 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00433 [flax] [poplar] Pkinase_C Protein kinase C terminal domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10011814 pacid=23165543 polypeptide=Lus10011814 locus=Lus10011814.g ID=Lus10011814.BGIv1.0 annot-version=v1.0 ATGGAGTCTGCAAGGTGTTGGTTCAATAGATTGAGATCAAAAGACAAACCAAGGTCTTCTAAAAAGAAAGAAGCCTCAACCAACGGCAAAGAGGGGACTA AAGCTCCAAGCACCGAAGAATTGCCATCAAATGTTACCAAACAAAGGGTCGCAGCTGCAAAGCAGTATATTGAAAATCACTATAAGAAGCAGATGAAAGA CCTGCAAGAAAGAAAGGATCGGCGTGATATGCTTGAGAGGAAATTGGCTGATGCTGAGGTCTCCGAGGAAGAGCAAAGTAACTTGATACAATATTTAGAG AAAAAGGAAACAGAATTTATGCGCCTGCTGAGACATAAAATGGGAGCTGATGATTTCGAACCATTGACAATGATAGGCAAGGGTGCCTTTGGGGAGGTTA GAATCTGTAGAGAGAAGTCAACAGGTCACGTATATGCAATGAAGAAGCTAAAGAAATCAGAGATGTTGCGAAGAGGCCAGGTTGAGCATGTAAAGGCAGA AAGGAATTTGCTTGCAGAGGTTGATAGCAATTGTATAGTCAAATTATATTGCTCGTTCCAAGATGAAGAGTATCTATATCTTGTAATGGAATATCTACCT GGTGGGGATATGATGACATTGCTTATGCGCAAGGATACCCTAACTGAAGATGAGGCTAGGTTTTATGTTGGGGAAACTGTACTGGCTATTGAATCTATCC ATAAACATAACTACATCCACAGAGATATCAAGCCTGACAACTTGCTACTAGACAAGCATGGCCACATGAAGCTCTCAGATTTTGGACTATGCAAACCACT AGATTGCACTAACCTCCAAGAAAAAGATTTTACAGCATCAAATAAGCTTAGTGGAGCTCTTCAGAGTGATGGACGGCCTACTGTGCCAAGGCGCACACAA CAGGAGCAATTGCAACACTGGCAGAGGAACAGAAGGATGCTTGCTTATTCAACCGTTGGAACGCCAGACTACATTGCCCCAGAGGTTTTGCTGAAGAAAG GATATGGAATGGAATGTGATTGGTGGTCCCTCGGAGCTATTATGTATGAGATGCTTGTAGGATACCCACCCTTCTATTCAGATGAGCCGATGTCAACTTG TAGAAAGATTGTAAATTGGAAGACTCATTTAAAGTTCCCAGAAGAAGCAAGGTTATCTCCTGAGGCTAAGGATCTTATCTGTAGGTTATTATGCAATGTA GAACAGAGACTTGGGACGAAGGGTGCTCATGAGATAAAGGCTCACCCCTGGTTTGAAGGAGTTGAATGGGACAGATTATATCAGATGAGAGCTGCATTTA TTCCGGAGGTCAACGATGAGTTGGACACTCAAAATTTTGAGAAGTTTGAAGAGGATGACAACCAAATGCATATTCCGAATAAATCTGGTCCTTGGAGAAA GATGCTGTCTTCCAAGGATATAAACTTTGTGGGTTACACGTACAAGAACTTTGAAATCGTAAACGACCATCAGTTACCTGGCATAGCCGAACTAAAGAAA AAGAGCACTAAATCGAAGAGACCTTCGATCAAGTCCCTTTTTGGTGAGTAG
AA sequence Show only first row Show all	>Lus10011814 pacid=23165543 polypeptide=Lus10011814 locus=Lus10011814.g ID=Lus10011814.BGIv1.0 annot-version=v1.0 MESARCWFNRLRSKDKPRSSKKKEASTNGKEGTKAPSTEELPSNVTKQRVAAAKQYIENHYKKQMKDLQERKDRRDMLERKLADAEVSEEEQSNLIQYLE KKETEFMRLLRHKMGADDFEPLTMIGKGAFGEVRICREKSTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLVMEYLP GGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKHGHMKLSDFGLCKPLDCTNLQEKDFTASNKLSGALQSDGRPTVPRRTQ QEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWKTHLKFPEEARLSPEAKDLICRLLCNV EQRLGTKGAHEIKAHPWFEGVEWDRLYQMRAAFIPEVNDELDTQNFEKFEEDDNQMHIPNKSGPWRKMLSSKDINFVGYTYKNFEIVNDHQLPGIAELKK KSTKSKRPSIKSLFGE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10011814 [exp]	0	1
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10039151 [exp]	1.0	0.9064
AT2G17550			unknown protein		Lus10016693 [exp]	1.7	0.8663
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10041855 [exp]	2.0	0.8760
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10013781 [exp]	2.8	0.8540
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10016576 [exp]	3.2	0.8533
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10021176 [exp]	4.5	0.8344
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10028417 [exp]	5.4	0.8034
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	6.5	0.8486
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10024285 [exp]	8.5	0.8298
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10016776 [exp]	9.8	0.8014

Compare expression of checked genes

Lus10011814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.