Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04430 979 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 958 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 949 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G14430 747 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G06050 480 / 4e-162 Putative methyltransferase family protein (.1) AT2G39750 471 / 1e-158 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 468 / 1e-157 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G10200 449 / 1e-151 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04060 448 / 7e-151 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 433 / 2e-144 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021177 [exp] 1086 / 0 AT1G04430 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10022291 [exp] 773 / 0 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10003656 [exp] 768 / 0 AT5G14430 872 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10001013 [exp] 473 / 1e-159 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10038973 [exp] 466 / 1e-157 AT5G04060 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 467 / 3e-157 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 465 / 1e-156 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 464 / 1e-156 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10027266 [exp] 462 / 1e-156 AT5G04060 890 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036800 [exp] 965 / 0 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 964 / 0 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G342300 [exp] 760 / 0 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G036732 [exp] 487 / 4e-170 AT1G04430 522 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G059500 [exp] 476 / 4e-161 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 472 / 2e-159 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G036666 [exp] 457 / 5e-159 AT4G14360 437 / 1e-151 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G043600 [exp] 463 / 1e-156 AT3G10200 928 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 446 / 3e-149 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 434 / 6e-145 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10011815 pacid=23165518 polypeptide=Lus10011815 locus=Lus10011815.g ID=Lus10011815.BGIv1.0 annot-version=v1.0 ATGAGAGGCAGACCGGATGGTGCGCAGAAGAAGCGTTTGATCACTTCTGTCTGTGTTATAGCCGTGTTTCTTGGATTCATATACTTCTACTATGGATCCG TTTTTGGTTCTCAAGGCCGTGGTGCATCGGCTCTAGAATATGGAAGCAAATCTTTGAAGAAACTCGGCTCATCTTATTTGGGCGGGGATGACGAATCTGA CAAAGAGGATGGAACCAAATTTTCTCTGGAAGATGGAGAGGATGATGTTGTGCCGAAAAGCTTTCCGGTTTGTGATGATCGGCATTCAGAACTGATTCCA TGCTTAGACAGGCATCTTATATATCAGATGAGACTGAAGCTAGACTTGTCAGTAATGGAGCACTATGAACGCCATTGTCCTCCCCCGGAAAGGAGGTTCA ATTGCTTAATTCCCCCTCCACCAGGGTACAAGGTCCCCATTAAGTGGCCCAAAAGTAGGGATGAAGTGTGGAAAGCAAATATTCCTCATACTCATCTTGC ACATGAAAAGTCTGATCAGAACTGGATGGTTGTGAAAGGTGATAAGATAGTCTTTCCTGGAGGAGGCACTCATTTTCACTATGGAGCTGACAAGTATATT GCTTCTATCGCAAATATGCTAAACTTTTCCAATAATGTGCTGAACAATGAAGGAAACGTAAGATCTGTTCTGGATGTGGGTTGTGGTGTGGCAAGTTTTG GGGGTTACCTTCTATCATCTGATATTATTGCGATGTCCCTGGCTCCAAATGATGTCCACCAAAACCAAATACAGTTTGCTCTAGAGAGGGGTATTCCTGC CTATCTTGGTGTTCTTGGGACCAAGAGGCTCCCTTATCCAAGCCGATCTTTCGAGTTTGCCCACTGTTCTCGTTGTAGAATAGATTGGCTTCAGAGGGAC GGTATTCTTCTTCTAGAGCTTGATCGGTTACTCAGACCAGGAGGTTATTTTGCATATTCATCACCTGAGGCATATGCACAAGATGAAGAAGATCTTAGAA TATGGAGAGAAATGAGTGCCCTTGTGGAAAGAATGTGCTGGAGAATTGCTGCAAAAAGAAACCAGACTGTCATTTGGCAGAAGTCTCTAACAAATGACTG TTATATGGAAAGAGAACCTGGTACTCAACCTCCTCTCTGTCGCTCGGATGATGATCCTGATGCTGTTTGGGGCGTGCAAATGGAAGCTTGCATAACACCC TATTCTGAGCACGACCATAGAGTGAAGGGCAGTGGATTAGCTCCTTGGCCAGCTAGATTGACCACTCCTCCGCCAAGACTTGCTGATTTTGGCTACTCAA ATGAAATGTTTGAGAAGGATGTGGAGCTCTGGAGAAGGAGAGTGGAGAGCTACTGGAATCTCTTGAGTCCGAAGGTTCAATCAGATACAATAAGGAATGT GATGGACATGAAAGCAAACCTGGGATCTTTTGCTGCTGCTCTTAAGAGCAAGGACGTATGGGTGATGAACGTGGTGCCAGAGGATGGACCTAACACGTTG AAGGTGATATATGACAGGGGATTGATAGGCACCGTCCACAGCTGGTGTGAAGCCTTCTCAACGTACCCCCGGACTTACGATTTGCTTCATGCTTGGACTG TGTTCTCCGACATCGAGAAGAAGGGGTGCGGTGCAGAAGATCTGCTGTTAGAGATGGATCGTGTGATCCGACCGAGTGGTTTCGTGATCATTCGCGACAA GCAATCAGTGGTAGATTACGTGAAAAAGTATTTAGTGGCACTGCATTGGGAAGCAGTAGACTCGAGCACTGAACAGGACCAAGAAGGTGAAGAGGTTGTG TTCATTATGCAGAAGAAACTCTGGCTGACCAGCGAGAGCCTTAGAGACACGGAATAG
AA sequence Show only first row Show all	>Lus10011815 pacid=23165518 polypeptide=Lus10011815 locus=Lus10011815.g ID=Lus10011815.BGIv1.0 annot-version=v1.0 MRGRPDGAQKKRLITSVCVIAVFLGFIYFYYGSVFGSQGRGASALEYGSKSLKKLGSSYLGGDDESDKEDGTKFSLEDGEDDVVPKSFPVCDDRHSELIP CLDRHLIYQMRLKLDLSVMEHYERHCPPPERRFNCLIPPPPGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGDKIVFPGGGTHFHYGADKYI ASIANMLNFSNNVLNNEGNVRSVLDVGCGVASFGGYLLSSDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRD GILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVERMCWRIAAKRNQTVIWQKSLTNDCYMEREPGTQPPLCRSDDDPDAVWGVQMEACITP YSEHDHRVKGSGLAPWPARLTTPPPRLADFGYSNEMFEKDVELWRRRVESYWNLLSPKVQSDTIRNVMDMKANLGSFAAALKSKDVWVMNVVPEDGPNTL KVIYDRGLIGTVHSWCEAFSTYPRTYDLLHAWTVFSDIEKKGCGAEDLLLEMDRVIRPSGFVIIRDKQSVVDYVKKYLVALHWEAVDSSTEQDQEGEEVV FIMQKKLWLTSESLRDTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10011815 [exp]	0	1
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10021177 [exp]	1.0	0.9856
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10011834 [exp]	1.7	0.9307
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10005560 [exp]	2.0	0.9457
AT1G64980			Nucleotide-diphospho-sugar tra...		Lus10024531 [exp]	2.4	0.9153
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10013695 [exp]	3.2	0.9175
AT4G36660			Protein of unknown function (D...		Lus10026030 [exp]	3.5	0.9234
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Lus10003045 [exp]	3.7	0.8980
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002939 [exp]	4.6	0.9138
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	7.1	0.9027
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10029736 [exp]	7.3	0.9116

Compare expression of checked genes

Lus10011815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.