Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44120 326 / 2e-107 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT1G03890 311 / 8e-102 RmlC-like cupins superfamily protein (.1) AT1G03880 301 / 5e-98 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT4G28520 246 / 5e-76 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4) AT2G28680 132 / 2e-34 RmlC-like cupins superfamily protein (.1) AT1G07750 109 / 2e-26 RmlC-like cupins superfamily protein (.1) AT2G28490 62 / 4e-10 RmlC-like cupins superfamily protein (.1) AT2G18540 57 / 2e-08 RmlC-like cupins superfamily protein (.1) AT4G36700 56 / 4e-08 RmlC-like cupins superfamily protein (.1) AT1G02335 43 / 0.0002 GL22 germin-like protein subfamily 2 member 2 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021179 [exp] 717 / 0 AT5G44120 385 / 1e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10010341 [exp] 552 / 0 AT5G44120 409 / 2e-139 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021868 [exp] 516 / 0 AT5G44120 330 / 2e-109 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021180 [exp] 511 / 2e-179 AT5G44120 377 / 1e-126 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011817 [exp] 471 / 4e-164 AT5G44120 358 / 2e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022927 [exp] 396 / 1e-134 AT5G44120 424 / 5e-145 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024891 [exp] 395 / 4e-134 AT5G44120 428 / 1e-146 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024889 [exp] 381 / 9e-129 AT5G44120 407 / 1e-138 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022929 [exp] 317 / 4e-104 AT5G44120 340 / 9e-113 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G308050 [exp] 489 / 2e-171 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004300 [exp] 488 / 1e-170 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004500 [exp] 486 / 8e-170 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 485 / 2e-169 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 485 / 2e-169 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.002G038100 [exp] 385 / 2e-130 AT5G44120 400 / 9e-136 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224700 [exp] 384 / 4e-130 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224400 [exp] 282 / 1e-90 AT5G44120 280 / 4e-89 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.007G047200 [exp] 129 / 2e-33 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.008G102900 [exp] 127 / 9e-33 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10011816 pacid=23165533 polypeptide=Lus10011816 locus=Lus10011816.g ID=Lus10011816.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCCGCAATTACACTTTCCTTGCTCTTGCACTCTGCTCCGTCCTCCTCTTCCACGCTTGCTCCGCCCAACATGAAACACAAGAGCAGCAGC CGGGAGCCCGCCGCCAATGGCAGCTCCGCCACACCATCGAGCAGAGAGGCCTCCTCTTGCCCGCTTACTCCAACGCCCCCAAGCTCATCTACGTTGACCA AGGAAGAGGATTCCACGGAGCCGCCTTCCCGGGTTGCCCCGAGACATACCAATCAGAGGAGGAATCCCAGCAGGAACAGAGACAAGGATCCAGGGACCAA CACCAAAAAGTCAGAGAGATCCGCAGGGGAGACGTCATCGCCATCCCCGCCGGAGTCGTAGACTGGTTCTACAACGACGCTCAATCTCCTCTTGTTCTTG TCCAGATCTTCGACACTAGCAGCTCCGACAACCAGCTCGACCAGAACTTCAGGAAATTCTTCCTCGCAGGGAACCCGCAGAGACAGGTGCAGGGGCAGAG AGGGCAGCAGTCGAGACACCTACACCAGGCAGGCGAGCAACACAGGGGACAACAAGGGCAGCGATCCGGCAACATCTTCCAAGCAATCGACGAGCAGTTC TTGGCTGAGGCATTCAACATCGACACCGACCTTGCTAGGAGGATCAAGAGCGAGAACGACAACAGGGGAATCATCGTCAGAGTCCAGCAAGAGCTTGAAT TCCTCAGCCCACGATTCAGCCAACAGGAGAGGCAATCCCGAAGGGAAGGCGGCGACGACAGGTACAACGGAATTGAAGAGACCTTCTGCACAGCCAAGCT GAAGGTGAACATCGACGACCCTTCACGCGCCGATGTCTTCAACCCACGCGCTGGACGACTCACAACCGTCAACAGCTTCAACCTCCCGATCCTCCGCCAA CTCCAGCTCAGCGCACAGAAGGGATTCCTCTACAGGAACGCTCTGATGACGCCGCACTGGAACACCAACGCGCACAGCGTCGCGTACATCACACGCGGGA GCGGTCAGGTCCAGATCGTGAACGAGAACGGGGAGAGTGTGTTCGACGGGCAAGTGCAGCAGGGACAGATAATCACTGCCCCGCAGGGCTTCGCTGTGAT CAAGAGAGCTGGAAATGAAGGGCTTGAATGGGTTGCATTCAAGACCAACGACAACGCTAAGATTAACCAGATTGCCGGAAGGGCGTCCACGATTAGGGCG ATTCCGAGGGATGTGCTGGCTAACGCGTTCGGAGTGTCGAGGGAGGAGGCCCAGAGGATCAAGTTTAGCCGGAGGGAGGTTTCGCTCTTCAGCCCTGGTA ACCAGTCTCAGCAGAGGAGGGACTACTGA
AA sequence Show only first row Show all	>Lus10011816 pacid=23165533 polypeptide=Lus10011816 locus=Lus10011816.g ID=Lus10011816.BGIv1.0 annot-version=v1.0 MASSRNYTFLALALCSVLLFHACSAQHETQEQQPGARRQWQLRHTIEQRGLLLPAYSNAPKLIYVDQGRGFHGAAFPGCPETYQSEEESQQEQRQGSRDQ HQKVREIRRGDVIAIPAGVVDWFYNDAQSPLVLVQIFDTSSSDNQLDQNFRKFFLAGNPQRQVQGQRGQQSRHLHQAGEQHRGQQGQRSGNIFQAIDEQF LAEAFNIDTDLARRIKSENDNRGIIVRVQQELEFLSPRFSQQERQSRREGGDDRYNGIEETFCTAKLKVNIDDPSRADVFNPRAGRLTTVNSFNLPILRQ LQLSAQKGFLYRNALMTPHWNTNAHSVAYITRGSGQVQIVNENGESVFDGQVQQGQIITAPQGFAVIKRAGNEGLEWVAFKTNDNAKINQIAGRASTIRA IPRDVLANAFGVSREEAQRIKFSRREVSLFSPGNQSQQRRDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10011816 [exp]	0	1
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10029992 [exp]	3.0	0.8200
AT5G67490			unknown protein		Lus10019019 [exp]	4.5	0.7863
AT2G38610			RNA-binding KH domain-containi...		Lus10021676 [exp]	4.9	0.7963
AT2G38610			RNA-binding KH domain-containi...		Lus10035015 [exp]	6.5	0.8116
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10028921 [exp]	11.5	0.7840
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10008615 [exp]	12.8	0.8049
					Lus10026314 [exp]	13.6	0.7995
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10035094 [exp]	16.1	0.7685
AT5G62730			Major facilitator superfamily ...		Lus10033101 [exp]	17.3	0.7217
AT4G16490			ARM repeat superfamily protein...		Lus10038811 [exp]	17.4	0.7932

Compare expression of checked genes

Lus10011816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.