Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14380 59 / 3e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021182 [exp] 402 / 1e-142 AT4G14380 52 / 6e-08 unknown protein Lus10021869 [exp] 165 / 1e-49 AT4G14380 40 / 8e-04 unknown protein Lus10041144 [exp] 127 / 4e-33 AT5G43330 590 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10003556 [exp] 42 / 0.0002 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G167200 [exp] 109 / 5e-29 AT4G14380 87 / 2e-21 unknown protein Potri.002G038400 [exp] 42 / 0.0001 AT2G20500 58 / 7e-11 unknown protein Potri.005G224200 [exp] 41 / 0.0002 AT2G20500 53 / 3e-09 unknown protein Potri.006G228800 [exp] 41 / 0.0005 AT2G26110 142 / 5e-40 Protein of unknown function (DUF761) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011818 pacid=23165553 polypeptide=Lus10011818 locus=Lus10011818.g ID=Lus10011818.BGIv1.0 annot-version=v1.0 ATGCGGCGTTCATCTTCATCGGGCAACTTCTCCAGGAAGCTCCAGCCAGCCAAGCGTGCCCTGAGGCGGTTAGCCTCCAAGTTCCGATCCAAGCTCACCG ACCTCGACTTCCCTAGAGCCATCCGGGCCATCCGAAACAGAACCAACCGGATCATCACCTACTGCTACCACCATCTCTTACGACAACTCCGAAACAGAAC CAACCGGATCATCACCTACTGCTCCCACCATCTCTTCCGACACAACCGTTCCCTCAAGCCCACCGCCGCCTCCTCCAAAACGCCGTCCTACCGTCACCAC AACCACCACAACTACATCTCCGACTACTACAGCAGTAAGCGCAACCTCCTCCACCATAACTTCTCCGCCATCTACATCGACCAGCTCTACTCCGACGACG ACAACCACGGCTCCACAAGCTCCCACCCCACCGCCGATCGGCCTGACAAACGGGGTAAGGAAGTGGCGGCTGGTGTTAACGGTAATAATAGTAATAAGAG GCCGCCGCTTCCGTTGCCGGTGGCGAGGAGGAGTAATTACAATTGTAGAGAAGGAGGGGTGGTGGAGAAAACGGTGCCGTCTTTGGTACAGAGGAGGAAG AAAAAGGAACATGTGGTGATTGTGGAGGAGAAGGAGAATAATAATAATAATAATAATAATCCGATGGAGACGCTAGAAGATGCGTGGAGGGAAGTGGTGG CGAGATCGCCGCAGCTCCGGCCGGTGGACGTAAGGGCGGATGAGTTTATACATAATTTTCGGGCGGATATGAAGATCCAGAAGGATAAGTCAATTGTTGA GTACCGTAAGCTGTTGGCTGGAGGTTCGTGA
AA sequence Show only first row Show all	>Lus10011818 pacid=23165553 polypeptide=Lus10011818 locus=Lus10011818.g ID=Lus10011818.BGIv1.0 annot-version=v1.0 MRRSSSSGNFSRKLQPAKRALRRLASKFRSKLTDLDFPRAIRAIRNRTNRIITYCYHHLLRQLRNRTNRIITYCSHHLFRHNRSLKPTAASSKTPSYRHH NHHNYISDYYSSKRNLLHHNFSAIYIDQLYSDDDNHGSTSSHPTADRPDKRGKEVAAGVNGNNSNKRPPLPLPVARRSNYNCREGGVVEKTVPSLVQRRK KKEHVVIVEEKENNNNNNNNPMETLEDAWREVVARSPQLRPVDVRADEFIHNFRADMKIQKDKSIVEYRKLLAGGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14380			unknown protein		Lus10011818 [exp]	0	1
AT5G40140			RING/U-box superfamily protein...		Lus10039470 [exp]	3.9	0.8346
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10008081 [exp]	4.6	0.8506
AT1G07400			HSP20-like chaperones superfam...		Lus10016457 [exp]	6.0	0.8569
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10013113 [exp]	6.6	0.8448
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10018219 [exp]	11.7	0.8292
AT1G72510			Protein of unknown function (D...		Lus10013156 [exp]	14.2	0.8646
AT2G41475			Embryo-specific protein 3, (AT...		Lus10019416 [exp]	16.4	0.7912
AT4G14380			unknown protein		Lus10021182 [exp]	17.6	0.8111
AT4G22600			unknown protein		Lus10028923 [exp]	17.7	0.8228
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10023113 [exp]	19.4	0.7402

Compare expression of checked genes

Lus10011818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.