Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43330 609 / 0 c-NAD-MDH2 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) AT1G04410 606 / 0 c-NAD-MDH1 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT5G56720 524 / 0 c-NAD-MDH3 cytosolic-NAD-dependent malate dehydrogenase 3, Lactate/malate dehydrogenase family protein (.1) AT5G58330 235 / 3e-74 lactate/malate dehydrogenase family protein (.1.2.3) AT3G47520 62 / 2e-10 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021870 [exp] 627 / 0 AT5G43330 606 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10041144 [exp] 612 / 0 AT5G43330 590 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10021184 [exp] 355 / 2e-124 AT5G43330 322 / 1e-111 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10038668 [exp] 229 / 4e-72 AT5G58330 707 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Lus10037935 [exp] 228 / 4e-70 AT5G58330 709 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Lus10021183 [exp] 124 / 2e-35 AT1G04410 123 / 6e-36 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10039642 [exp] 57 / 4e-09 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10011587 [exp] 53 / 1e-07 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G071000 [exp] 632 / 0 AT5G43330 602 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Potri.008G166800 [exp] 627 / 0 AT5G43330 605 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Potri.002G141700 [exp] 583 / 0 AT1G04410 572 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.002G141900 [exp] 513 / 0 AT1G04410 501 / 5e-180 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.008G031700 [exp] 219 / 5e-68 AT5G58330 710 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Potri.001G376500 [exp] 60 / 5e-10 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.017G152000 [exp] 59 / 6e-10 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10011819 pacid=23165510 polypeptide=Lus10011819 locus=Lus10011819.g ID=Lus10011819.BGIv1.0 annot-version=v1.0 ATGGCCAAGGATCCCGTTCGCGTTCTCGTCACCGGGGCTGCAGGGCAAATCGGATATGCTCTTGTTCCCATGATTGCTAGGGGAGTGATGCTTGGTGCTG ACCAACCAGTCATCCTCCACATGCTTGATATCCCACCTGCAGCTGAGGCTTTGAATGGTGTCAAGATGGAGTTGGTTGATGCTGCGTTCCCTCTTCTTAA AGGTGTTGTGGCTACAACTGACGTTGTGGAGGCATGCACTGGGGTCAATATTGCAGTTATGGTTGGTGGTTTCCCTAGGAAAGAAGGTATGGAGAGGAAG GATGTGATGTCTAAGAACGTCTCCATCTACAAGTCCCAGGCTTCCGCCCTAGAGAAGCATGCCGCTGCAAACTGCAAGGTTCTGGTTGTTGCTAACCCAG CAAACACCAATGCCTTGATTCTCAAGGAATTTGCACCATCCATCCCTGAACAGAACATTACTTGCTTGACTAGACTGGACCATAACAGGGCACTTGGTCA AGTCTCTGAGAGACTTAACGTTCCAGTTTCTGATGTGAAAAACGTGATTATCTGGGGCAATCACTCGTCAACTCAGTATCCCGATGTCAACCATGCCACT GTTAAAACATCATCTGGTGATAAGCCTGTCAGAGAGCTTGTTAAGGATGACGTGTGGCTGAACGCTGAGTTCATCACAACCGTCCAACAACGTGGTGCTG CAATCATCAAGGCCAGGAAGCTCTCAAGTGCACTATCTGCTGCTAGCTCAGCTTGCGACCACATTCGTGACTGGGTTCTTGGAACTCCCCAGGGAACTTG GGTTTCAATGGGTGTGTACTCTGATGGTTCGTACAATGTCCCTGCTGGACTTATCTATTCTTTCCCAGTGACATGCCAGAATGGAGAGTGGAAGATTGTC CAGGGTCTTGCAATTGATGAATTCTCAAGGAAGAAGCTGGATCTGACAGCAGAGGAACTGAGCGAGGAGAAGGCTCTTGCTTACTCGTGTCTCAATTAA
AA sequence Show only first row Show all	>Lus10011819 pacid=23165510 polypeptide=Lus10011819 locus=Lus10011819.g ID=Lus10011819.BGIv1.0 annot-version=v1.0 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERK DVMSKNVSIYKSQASALEKHAAANCKVLVVANPANTNALILKEFAPSIPEQNITCLTRLDHNRALGQVSERLNVPVSDVKNVIIWGNHSSTQYPDVNHAT VKTSSGDKPVRELVKDDVWLNAEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPQGTWVSMGVYSDGSYNVPAGLIYSFPVTCQNGEWKIV QGLAIDEFSRKKLDLTAEELSEEKALAYSCLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10011819 [exp]	0	1
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Lus10006168 [exp]	2.6	0.9420
AT5G62620			Galactosyltransferase family p...		Lus10042164 [exp]	9.2	0.9284
AT1G12470			zinc ion binding (.1)		Lus10033725 [exp]	10.1	0.9161
AT3G44220			Late embryogenesis abundant (L...		Lus10043410 [exp]	12.2	0.9366
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	15.0	0.9341
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10035723 [exp]	15.3	0.9272
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10011430 [exp]	20.5	0.9319
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	21.8	0.9261
					Lus10011622 [exp]	27.5	0.9235
AT4G34800			SAUR-like auxin-responsive pro...		Lus10007563 [exp]	28.2	0.9232

Compare expression of checked genes

Lus10011819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.