Plant FIBer expression Database

Lus10011821 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14385 132 / 5e-40 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021187
[exp]
229 / 2e-78 AT4G14385 174 / 1e-56 unknown protein
Lus10003559
[exp]
126 / 1e-37 AT4G14385 154 / 2e-48 unknown protein
Lus10033887
[exp]
123 / 3e-34 AT4G14385 134 / 4e-38 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G038700
[exp]
139 / 1e-42 AT4G14385 168 / 4e-54 unknown protein
Potri.005G223900
[exp]
136 / 2e-41 AT4G14385 166 / 2e-53 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09340 NuA4 Histone acetyltransferase subunit NuA4
Representative CDS sequence
>Lus10011821 pacid=23165557 polypeptide=Lus10011821 locus=Lus10011821.g ID=Lus10011821.BGIv1.0 annot-version=v1.0
ATGCCTTCGGGGCAGAAAGCTGGTCCGAATCCTGCGGCCATGCTCTCTTCCCTCGTAGCAAAGCGAGATAAGCTACAGGAGGAGCTCCGAAGCATCGAGA
AACAGGTGTACGAGTATGAAACCAGCTACTTGCAAGATTCAAGTCATTTCGGGAATATGCTTAAAGGGTTTGAGGGGTTTCTGTCTTCTTCAAAGAATTC
ATCCAACTTAAAGAGATCTAGGAAACTTCTGCCAGAAGACAGACTCTTCTCGTTGTCGTCAGTTACGTCACCAGCAGCTGAGGAAATTGGGGTTGGCCGT
GATGATGGAAGAACTGATGTAGGTTTTGGGAGGGCTAAAGGCGGAAGCTTGCCAACAAATGGGCAGGGGAAGCCGAAGAAGGGAAGAACATCAGCAGGAC
CTAGAGATGTAAAGAAACTGAGGCCATCAAGTGAAGCAGAATTCGACGATGAAGATGAGCCCTTATGA
AA sequence
>Lus10011821 pacid=23165557 polypeptide=Lus10011821 locus=Lus10011821.g ID=Lus10011821.BGIv1.0 annot-version=v1.0
MPSGQKAGPNPAAMLSSLVAKRDKLQEELRSIEKQVYEYETSYLQDSSHFGNMLKGFEGFLSSSKNSSNLKRSRKLLPEDRLFSLSSVTSPAAEEIGVGR
DDGRTDVGFGRAKGGSLPTNGQGKPKKGRTSAGPRDVKKLRPSSEAEFDDEDEPL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G14385 unknown protein Lus10011821
[exp]
0 1
AT1G72640 NAD(P)-binding Rossmann-fold s... Lus10000373
[exp]
2.0 0.8949
AT5G26040 HDA2 histone deacetylase 2 (.1.2) Lus10024990
[exp]
2.4 0.8789
AT1G11340 S-locus lectin protein kinase ... Lus10030768
[exp]
4.5 0.8495
AT1G67080 ABA4 abscisic acid (aba)-deficient ... Lus10009168
[exp]
5.9 0.8378
AT3G27050 unknown protein Lus10032042
[exp]
6.0 0.8452
AT5G24060 Pentatricopeptide repeat (PPR)... Lus10027532
[exp]
6.2 0.8844
AT4G19540 INDH, INDL IND1(iron-sulfur protein requi... Lus10019468
[exp]
6.7 0.8309
AT3G07750 3'-5'-exoribonuclease family p... Lus10006382
[exp]
6.9 0.8291
AT5G44650 Y3IP1, AtCEST Ycf3-interacting protein 1, Ar... Lus10038385
[exp]
10.0 0.8628
AT1G08980 ATTOC64-I, ATAM... ARABIDOPSIS THALIANA TRANSLOCO... Lus10004466
[exp]
10.6 0.8366

Lus10011821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.