Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04400 773 / 0 FHA, AT-PHH1, CRY2, ATCRY2 cryptochrome 2 (.1.2) AT4G08920 656 / 0 OOP2, HY4, BLU1, CRY1, ATCRY1 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) AT3G15620 181 / 5e-49 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT5G24850 144 / 2e-36 CRY3 cryptochrome 3 (.1) AT4G25290 47 / 5e-05 DNA photolyases;DNA photolyases (.1) AT2G47590 46 / 5e-05 PHR2 photolyase/blue-light receptor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021188 [exp] 973 / 0 AT1G04400 747 / 0.0 cryptochrome 2 (.1.2) Lus10033446 [exp] 655 / 0 AT4G08920 1009 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10020930 [exp] 639 / 0 AT4G08920 899 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10021189 [exp] 218 / 5e-68 ND / Lus10020878 [exp] 136 / 9e-34 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10033499 [exp] 106 / 8e-25 AT5G24850 440 / 4e-153 cryptochrome 3 (.1) Lus10022095 [exp] 109 / 1e-24 AT3G15620 725 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10000521 [exp] 62 / 3e-10 AT3G15620 295 / 7e-98 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10007880 [exp] 50 / 5e-06 AT2G47590 521 / 0.0 photolyase/blue-light receptor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G071200 [exp] 967 / 0 AT1G04400 799 / 0.0 cryptochrome 2 (.1.2) Potri.002G096900 [exp] 673 / 0 AT4G08920 1017 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.005G164700 [exp] 667 / 0 AT4G08920 999 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.008G166632 [exp] 276 / 4e-89 AT1G04400 249 / 5e-80 cryptochrome 2 (.1.2) Potri.003G060000 [exp] 181 / 5e-49 AT3G15620 908 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Potri.006G277500 [exp] 130 / 1e-31 AT5G24850 781 / 0.0 cryptochrome 3 (.1) Potri.008G166566 [exp] 97 / 4e-23 ND / Potri.002G204000 [exp] 58 / 1e-08 AT2G47590 530 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.014G128500 [exp] 57 / 2e-08 AT2G47590 540 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.015G129500 [exp] 44 / 0.0006 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03441 [flax] [poplar] FAD_binding_7 FAD binding domain of DNA photolyase CL0039 [flax] [poplar] HUP PF00875 [flax] [poplar] DNA_photolyase DNA photolyase
Representative CDS sequence Show only first row Show all	>Lus10011822 pacid=23165525 polypeptide=Lus10011822 locus=Lus10011822.g ID=Lus10011822.BGIv1.0 annot-version=v1.0 ATGGGTAGCAGTAGAACTATTGTTTGGTTTAGGAGAGACCTTAGGATTGAAGATAATCCAGCACTAGCAGCTGCTGCAAAAGATGGTGCAGTGTTTCCTG TGTATATTTGGTGTCCTGAAGAGGAAGGGCAGTTTTATCCGGGCCGGGTTTCGCGGTGGTGGTTGAAGCAGTCACTTGCTCACTTGGGGAAATCCCTCAA ATCTCTTGGGGCGGAACTTGCCCTCATCAAAACCCATAGCACTTTTGATGCTCTCCGTGATTGTATCAATGCCATTGGAGCAACCAGAGTGGTCTTCAAT CATCTCTACGATCCGGTATCTCTTGTCCGTGATCACAGTATCAAAGACAAACTGGCAGGACATGGAATCTCTGTTCAAAGTTATAATGCAGATTTGTTAT TTGAACCATGGGAGATATATGATGATCAAGGACATGCTTTTACAACATTCAATCCATATTGGGAGAAGTGCTTGCATATGCAGATGGAGCCTGTTTCACA TCTTCGTCCATGGCGGTTGGTTCCTGCTACAGGTACAATTAAAACGAGTGTGGTGGATGACCTGGGTCTGGAAGATGAATTGGAAAAGGCAAGCAATTCC TTGTTAGGAAGAGCATGGTCTCCAGGTTGGGGTAATGCTGACAAAGCTTTAACGGAATTTGTTGAACAACATCTAGTTCACTATTTAGAGAACAGACTTA AAGTTGGGGGGAACTCCACTTCACTCTTGTCCCCGTATCTCCATTTCGGAGAAATGAGCGTTAGAAAAGTTTTTCAGAGTGTTCTAATGAAGCAACTAGT GTGGGAGGAAGAACAAAACATGAAAGGAAAAGAAAGTGTGGACCGGTTTCTTAGGTCGATTGGTTTCAGAGAATACTCCCGTTATCTTTGTTTCAATTTC CCCTTCACGCACGAGCGATCATTACTAGGACACTTGAAATACTTCCCTTGGAATGCCAACCAAGCCCATTTCAAGTCCTGGAGACAAGGAAGAACTGGCT ACCCTCTTGTTGATGCCGGAATGAGGGAGCTGTGGGCAACTGGTTGGATGCACAATAGAATAAGAGTGATCGCGTCGAGCTTTGCTGTCAAAGTTCTGCT CTTGCCATGGAGATGGGGGATGAAGTATTTCTGGGACACACTTTTGGACGCAGACCTAGAAAGTGACATCCTTGGTTGGCAATATATATCGGGAAGCTTA CCAGATGGCCATGAACTTGAACGTATAGACAGTCCAGAGATCCAAGGTTCCAAATTTGACCCAGAAGGTGAATATGTGAGACAATGGTTGCCAGAATTGG CTAGAATGCCAACCGAATGGATTCATCACCCATGGGATGCACCTGAGATTGTGCTTAGATCTGCTGGGGTTGAACTGGGGCTAAACTATCCGATGCCTAT AATCGATCTAGACAAAGCTAAAGAACTTCTGACTTCATCCATATTCAAGATGTGGGAAGCAGAAGCGGCTGCCAGGGCATCAAGCTCAAGCGGGACAACT GAAGTAGTTGGTGATAATTCAGACATTGCGGATATTGCAAGCATCCCAAAGGTTATCCTGAGGGAGAAATCCAAAGTTGCTTGTCCTAGTATTTCATCTA ATGATCAGAAGGTGCCATCATTTCACAGTATGAAGAAGGAATTAGTCAGTAAGAAGAGACCGAAATGCATGGAGGGGGATAAGCTGCAACATCGTAACGA TGGAGTAGGGACTTCAAGAGGAGACGTAGAATTGTACTCGACTGCTGAATCTTCTGCGGCTAAAAAGCAGGCAACAACGAGCATATGTTCATTTTCTGTT CCACAGTATAGTTCGTCGTCAGAAGGCAACAGCACAGCTCAGGAATGCGAACAATCAGAGGGATGTCAATTGCAAATTGACTTGGCAAAAAGTCCAACCA AAGATGTGGTTCTTTCTATCAAACTTGTCTTGGGTTCCAACTTGCAGTTACCATGGGATCTTGATGGGATTCCGAGACTTGTGGGTGATGAAGGAAATAG ACACAACATCATTAGACCATGTCCAAACTCAGTCTGA
AA sequence Show only first row Show all	>Lus10011822 pacid=23165525 polypeptide=Lus10011822 locus=Lus10011822.g ID=Lus10011822.BGIv1.0 annot-version=v1.0 MGSSRTIVWFRRDLRIEDNPALAAAAKDGAVFPVYIWCPEEEGQFYPGRVSRWWLKQSLAHLGKSLKSLGAELALIKTHSTFDALRDCINAIGATRVVFN HLYDPVSLVRDHSIKDKLAGHGISVQSYNADLLFEPWEIYDDQGHAFTTFNPYWEKCLHMQMEPVSHLRPWRLVPATGTIKTSVVDDLGLEDELEKASNS LLGRAWSPGWGNADKALTEFVEQHLVHYLENRLKVGGNSTSLLSPYLHFGEMSVRKVFQSVLMKQLVWEEEQNMKGKESVDRFLRSIGFREYSRYLCFNF PFTHERSLLGHLKYFPWNANQAHFKSWRQGRTGYPLVDAGMRELWATGWMHNRIRVIASSFAVKVLLLPWRWGMKYFWDTLLDADLESDILGWQYISGSL PDGHELERIDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPEIVLRSAGVELGLNYPMPIIDLDKAKELLTSSIFKMWEAEAAARASSSSGTT EVVGDNSDIADIASIPKVILREKSKVACPSISSNDQKVPSFHSMKKELVSKKRPKCMEGDKLQHRNDGVGTSRGDVELYSTAESSAAKKQATTSICSFSV PQYSSSSEGNSTAQECEQSEGCQLQIDLAKSPTKDVVLSIKLVLGSNLQLPWDLDGIPRLVGDEGNRHNIIRPCPNSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04400		FHA, AT-PHH1, C...	cryptochrome 2 (.1.2)		Lus10011822 [exp]	0	1
AT4G10730			Protein kinase superfamily pro...		Lus10017326 [exp]	8.4	0.7881
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	15.9	0.7867
AT1G04400		FHA, AT-PHH1, C...	cryptochrome 2 (.1.2)		Lus10021188 [exp]	20.2	0.7294
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Lus10026266 [exp]	34.3	0.7188
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10001548 [exp]	35.2	0.7425
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10003437 [exp]	36.4	0.7313
AT1G27290			unknown protein		Lus10015767 [exp]	39.2	0.7480
AT1G08110			lactoylglutathione lyase famil...		Lus10021429 [exp]	45.3	0.7700
AT1G56220			Dormancy/auxin associated fami...		Lus10031488 [exp]	47.3	0.7289
AT3G32930			unknown protein		Lus10039189 [exp]	48.7	0.7424

Compare expression of checked genes

Lus10011822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.