Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08650 211 / 1e-68 ATPPCK1, PPCK1 phosphoenolpyruvate carboxylase kinase 1 (.1.2) AT3G04530 200 / 2e-64 ATPPCK2, PEPCK2, PPCK2 phosphoenolpyruvate carboxylase kinase 2 (.1) AT1G50700 161 / 3e-47 CPK33 calcium-dependent protein kinase 33 (.1) AT3G20410 160 / 9e-47 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G04720 154 / 2e-44 CPK21 calcium-dependent protein kinase 21 (.1) AT1G12580 153 / 4e-44 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT1G76040 153 / 5e-44 CPK29 calcium-dependent protein kinase 29 (.1.2) AT3G49370 152 / 3e-43 Calcium-dependent protein kinase (CDPK) family protein (.1) AT4G21940 150 / 1e-42 CPK15 calcium-dependent protein kinase 15 (.1.2) AT1G61950 149 / 1e-42 CPK19 calcium-dependent protein kinase 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042560 [exp] 235 / 2e-78 AT1G08650 344 / 1e-119 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10014657 [exp] 221 / 9e-73 AT1G08650 351 / 2e-122 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10021190 [exp] 193 / 8e-63 AT3G04530 186 / 1e-58 phosphoenolpyruvate carboxylase kinase 2 (.1) Lus10040071 [exp] 160 / 2e-46 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10021531 [exp] 159 / 2e-46 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10020046 [exp] 155 / 7e-45 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10038889 [exp] 155 / 8e-45 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10006777 [exp] 155 / 8e-45 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10017251 [exp] 154 / 2e-44 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G071400 [exp] 270 / 3e-92 AT1G08650 298 / 1e-101 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.008G166500 [exp] 267 / 6e-91 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.019G018100 [exp] 238 / 9e-80 AT3G04530 379 / 2e-133 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.013G046100 [exp] 234 / 3e-78 AT3G04530 366 / 1e-128 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.012G134600 [exp] 169 / 4e-50 AT1G12580 569 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.015G136900 [exp] 165 / 1e-48 AT1G12580 587 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.004G015500 [exp] 162 / 3e-47 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.003G120800 [exp] 159 / 2e-46 AT1G12580 605 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.002G017000 [exp] 159 / 4e-46 AT1G76040 758 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.005G245000 [exp] 157 / 1e-45 AT1G76040 729 / 0.0 calcium-dependent protein kinase 29 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10011824 pacid=23165563 polypeptide=Lus10011824 locus=Lus10011824.g ID=Lus10011824.BGIv1.0 annot-version=v1.0 ATGGATCTCTGTCCCAATTCCGATCTCCACACCCTAATCGTCGCCAACGGCGGCGCACTCCCGGAGGCGGAAGCCAGGTCGATCTTCGCCCAATTGATGT CTGCGATCTCGCACTGCCATTGGAACGGCGTGGTCCACAGGGATGTGAAGCCGGACAATGTTCTTTTCGATTCTTGGAATTCCGTGAAATTGGCCGACTT CGGTTCGGCGGAGGTGGTGGCGACGACGGAGGAGGCGGCGGTGACGGGAGTCGTCGGGACGCCGTATTACGTGGCGCCGGAGGTTCTGTTGGGGAGGGAG TACGGTGAGAAAGTGGACGTGTGGAGCGCAGGGGTGGTTCTGTACATAATGCTCGCCGGTTTTCCTCCGTTTTACGGGGAGACGGCGGTGGAGATCTTCG ACGCGGTGTTGAGAGGGAATCTGAGGTTTCCGACTAGGGTTTTCCAGTCGGTGTCTCCCGGTGCGAAGGATCTGGTGAGGAGGATGCTGTGTAAAGATGT GTCGAGAAGATTCTCTGCTGAGCAAGTGCTTAGGCATCCATGGGTGAAAAGTGGTGGTGGAACCACCTGA
AA sequence Show only first row Show all	>Lus10011824 pacid=23165563 polypeptide=Lus10011824 locus=Lus10011824.g ID=Lus10011824.BGIv1.0 annot-version=v1.0 MDLCPNSDLHTLIVANGGALPEAEARSIFAQLMSAISHCHWNGVVHRDVKPDNVLFDSWNSVKLADFGSAEVVATTEEAAVTGVVGTPYYVAPEVLLGRE YGEKVDVWSAGVVLYIMLAGFPPFYGETAVEIFDAVLRGNLRFPTRVFQSVSPGAKDLVRRMLCKDVSRRFSAEQVLRHPWVKSGGGTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10011824 [exp]	0	1
AT1G25550	GARP		myb-like transcription factor ...		Lus10021699 [exp]	2.6	0.8871
AT1G68670	GARP		myb-like transcription factor ...		Lus10035043 [exp]	4.2	0.8672
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	5.1	0.8678
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10029701 [exp]	5.5	0.8461
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10018617 [exp]	8.3	0.7963
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	10.0	0.8476
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10007646 [exp]	12.2	0.8531
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10018364 [exp]	15.2	0.8461
AT3G44610			Protein kinase superfamily pro...		Lus10043435 [exp]	15.5	0.8448
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	16.4	0.8371

Compare expression of checked genes

Lus10011824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.