Plant FIBer expression Database

Lus10011825 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G23255 244 / 1e-81 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G163500
[exp]
292 / 5e-100 AT3G23255 249 / 1e-83 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF05707 Zot Zonular occludens toxin (Zot)
Representative CDS sequence
>Lus10011825 pacid=23165514 polypeptide=Lus10011825 locus=Lus10011825.g ID=Lus10011825.BGIv1.0 annot-version=v1.0
ATGGAGATGTTCCTTCCCGGTGGAAAGCCAGTGGAAACAGGAAGACATTGCAGCAGCAATCCGATTACTCTTCTTTCTGGGCCTCCAACCTCCGGGAAAA
CATCTCTACTCTTCCAGTATGCAATCAACACCGCCTTGAATAGAAACCGCAAAGTGGTCTTCATTTGCAGCCGCCACCGTATGGAAGCCAACCCTCCTTA
TCTATCTCAAGGCGTGGATCCTTCTTCCGATGTATTTGAACGAATTCAAATGAAGTATGTGGAAGATGATCAAGGAATTAAGAAGTACATGGCTGCATTC
CACCTGCTCGACACATTTCCTGCTGCTGTCGTTATTGATGACTTTGGAGGTTTCTTTGATGAAAGGGTTTGCAAAGAGAGATACAACAATCCTCGGGGAA
GAGACTTGGAAATGGTTCGGATATTGGCTCTGTGCCACAACGCAGTAGGACATGCTAATGAGAAGGGGAAATGTGAGTTTTTGCTCTCTGATACGCACCA
TGGAGAATCTCCAAGATTGCTCTTCATCTACAAACGTTGGATATCATGTTTCTTAACCGTTAAAGCTGATGATGTGGGTGTTTGTCCTCTTGAAGCTGAC
GGCAAAGGATCGTTTCTTCTTACAAGCAGTGGAGTGTCAACGAGCGGGAGAAATCCAGGGAGGAGGCGGACTGCAAAATACTCGATAATGCTTCAGTACC
TTATCGTGGAGGGGATAACTGAAGATGAGGAGAGTAACAGTGATGTAGGTTAA
AA sequence
>Lus10011825 pacid=23165514 polypeptide=Lus10011825 locus=Lus10011825.g ID=Lus10011825.BGIv1.0 annot-version=v1.0
MEMFLPGGKPVETGRHCSSNPITLLSGPPTSGKTSLLFQYAINTALNRNRKVVFICSRHRMEANPPYLSQGVDPSSDVFERIQMKYVEDDQGIKKYMAAF
HLLDTFPAAVVIDDFGGFFDERVCKERYNNPRGRDLEMVRILALCHNAVGHANEKGKCEFLLSDTHHGESPRLLFIYKRWISCFLTVKADDVGVCPLEAD
GKGSFLLTSSGVSTSGRNPGRRRTAKYSIMLQYLIVEGITEDEESNSDVG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G23255 unknown protein Lus10011825
[exp]
0 1
Lus10016109
[exp]
1.4 0.8992
AT3G63530 BB2, BB BIG BROTHER, RING/U-box superf... Lus10019703
[exp]
2.4 0.8858
AT2G45850 AT-hook AT hook motif DNA-binding fami... Lus10030381
[exp]
4.0 0.8833
AT4G37810 unknown protein Lus10007240
[exp]
6.9 0.8900
AT3G19184 B3 AP2/B3-like transcriptional fa... Lus10014043
[exp]
8.8 0.8807
AT1G63260 TET10 tetraspanin10 (.1.2.3) Lus10029562
[exp]
8.9 0.8815
AT3G18380 SHH2 SAWADEE homeodomain homolog 2,... Lus10017944
[exp]
10.2 0.8261
AT4G01190 ATPIPK10 phosphatidylinositol phosphate... Lus10003028
[exp]
12.4 0.8578
AT5G65120 unknown protein Lus10000581
[exp]
12.6 0.8584
Lus10035688
[exp]
13.0 0.8707

Lus10011825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.