Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39840 513 / 0 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT5G59160 503 / 1e-180 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT1G64040 496 / 6e-178 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT5G43380 496 / 7e-178 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT2G29400 491 / 7e-176 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT3G46820 484 / 2e-173 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT4G11240 474 / 4e-169 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G27840 465 / 2e-165 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT3G05580 458 / 5e-163 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G55260 281 / 2e-93 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021872 [exp] 566 / 0 AT2G39840 523 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10022019 [exp] 523 / 0 AT2G39840 565 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10042559 [exp] 522 / 0 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10030163 [exp] 520 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001025 [exp] 520 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004692 [exp] 519 / 0 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10040259 [exp] 517 / 0 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10016489 [exp] 497 / 3e-178 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004989 [exp] 493 / 2e-176 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G166300 [exp] 535 / 0 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.013G045900 [exp] 530 / 0 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 525 / 0 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G060800 [exp] 518 / 0 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.010G197600 [exp] 517 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.009G037700 [exp] 500 / 2e-179 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.001G245700 [exp] 498 / 1e-178 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.001G098600 [exp] 496 / 1e-177 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.016G142700 [exp] 484 / 4e-173 AT2G39840 493 / 1e-177 type one serine/threonine protein phosphatase 4 (.1) Potri.006G113100 [exp] 473 / 7e-169 AT2G39840 488 / 4e-175 type one serine/threonine protein phosphatase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10011827 pacid=23165542 polypeptide=Lus10011827 locus=Lus10011827.g ID=Lus10011827.BGIv1.0 annot-version=v1.0 ATGATAGAACGCTGGGTTCTTGACAGTATCATCAGCCGATTGCTTGAAGTCAGGGGAAAGCCCGGAAAGCTGGTTCAGCTCTCCGAGAGCGAAATCGTCC AGCTTTGTGTCTCCTCCCGCCAGGTTTTACTGAACCAGCCTAATCTCTTGGAGATTGAAGCTCCTATCAACATCTGTGGAGACATCCATGGACAGTACAG TGACCTGCTAAGGATATTTGAGAGTGTAGGGTTCCCACCAAGAGCGAATTACTTGTTCTTGGGAGACTATGTGGACAGAGGGAAACAAAGCCTTGAGACC ATTTGTCTTCTCTTGGCTTACAAGATCAAGTACCCTGAGAACTTCTTCCTACTGAGAGGCAACCATGAATGTGCCTCTCTCAACAGGATATACGGCTTCT ACGACGAGTGTAAACGCAGGTACAGTGTCAGGCTGTGGAAGCTCTTCACAGACAGCTTTAATTGCCTCCCCGTGGCGGCTCTCATTGATGAAAAGATTCT ATGTATGCACGGTGGGTTGTCTCCTGATCTCCATAGCTTGGACCAAATCAGGAACCTACCGCGGCCAACTTCCATCCCTGACAGTGGATTGTTGTGTGAT CTTCTATGGTCTGATCCTTCCAAGGACATTCGAGGGTGGGGGCCGAACGAGAGAGGTGTTTCGTATACGTTTGGAGCTGATCGAGTCACTGAGTTTCTTC GCAAGCTTGATCTTGATCTAATCTGCAGGGCACATCAGGTTATGGAGGATGGATATGAGTTCTTTGCTAATAAGCAACTAGTGACAATATTCTCAGCACC AAATTACTGTGGGGAGTTTGACAATGCCGGTGCAATGATGAGTGTGGATGGGGACTTGTTGTGTTCATTTCAGATACTGAGGCCATTGGAGAAGAAACCA GCAAGCTTCAAGGGTTGGTTGGTTGGGTTGAACCGTGTTGAATCCTCTTCCGCCGGAAACGAGTTGAGATGCAACAAAGGTACATGTTGTGCCGATGAGT ATGGATTCCGTGTGCTTGAGTCGAGATTGTCGATGGTCGAAGAGACCCCAATTGGATCCAAAACAAACCCAACAAAGTGA
AA sequence Show only first row Show all	>Lus10011827 pacid=23165542 polypeptide=Lus10011827 locus=Lus10011827.g ID=Lus10011827.BGIv1.0 annot-version=v1.0 MIERWVLDSIISRLLEVRGKPGKLVQLSESEIVQLCVSSRQVLLNQPNLLEIEAPINICGDIHGQYSDLLRIFESVGFPPRANYLFLGDYVDRGKQSLET ICLLLAYKIKYPENFFLLRGNHECASLNRIYGFYDECKRRYSVRLWKLFTDSFNCLPVAALIDEKILCMHGGLSPDLHSLDQIRNLPRPTSIPDSGLLCD LLWSDPSKDIRGWGPNERGVSYTFGADRVTEFLRKLDLDLICRAHQVMEDGYEFFANKQLVTIFSAPNYCGEFDNAGAMMSVDGDLLCSFQILRPLEKKP ASFKGWLVGLNRVESSSAGNELRCNKGTCCADEYGFRVLESRLSMVEETPIGSKTNPTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10011827 [exp]	0	1
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10031455 [exp]	1.4	0.9520
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10013552 [exp]	2.2	0.9554
AT1G52400		ATBG1, BGLU18, ...	BETA-GLUCOSIDASE HOMOLOG 1, A....		Lus10030575 [exp]	4.6	0.9450
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	5.3	0.9356
					Lus10018997 [exp]	6.5	0.9277
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10019452 [exp]	8.8	0.9193
AT1G63310			unknown protein		Lus10008287 [exp]	10.2	0.9309
AT5G63710			Leucine-rich repeat protein ki...		Lus10025703 [exp]	10.6	0.9275
AT5G27690			Heavy metal transport/detoxifi...		Lus10033469 [exp]	11.5	0.9224
AT1G11570		NTL	NTF2-like (.1.2)		Lus10020061 [exp]	11.5	0.9103

Compare expression of checked genes

Lus10011827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.