Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44480 438 / 4e-146 BGLU17 beta glucosidase 17 (.1.2) AT3G60140 418 / 1e-137 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT5G24550 412 / 1e-135 BGLU32 beta glucosidase 32 (.1) AT2G44470 403 / 1e-133 BGLU29 beta glucosidase 29 (.1.2.3) AT3G60120 402 / 3e-132 BGLU27 beta glucosidase 27 (.1) AT5G42260 396 / 4e-130 BGLU12 beta glucosidase 12 (.1) AT5G44640 394 / 2e-129 BGLU13 beta glucosidase 13 (.1) AT5G24540 393 / 2e-128 BGLU31 beta glucosidase 31 (.1) AT2G44450 391 / 3e-128 BGLU15 beta glucosidase 15 (.1) AT2G44460 392 / 2e-127 BGLU28 beta glucosidase 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030516 [exp] 882 / 0 AT2G44480 476 / 4e-164 beta glucosidase 17 (.1.2) Lus10030577 [exp] 779 / 0 AT5G24550 461 / 2e-157 beta glucosidase 32 (.1) Lus10030518 [exp] 772 / 0 AT5G24550 485 / 3e-167 beta glucosidase 32 (.1) Lus10012869 [exp] 768 / 0 AT5G24550 467 / 4e-160 beta glucosidase 32 (.1) Lus10039513 [exp] 759 / 0 AT2G44480 472 / 3e-162 beta glucosidase 17 (.1.2) Lus10030911 [exp] 755 / 0 AT5G24550 475 / 1e-163 beta glucosidase 32 (.1) Lus10024152 [exp] 751 / 0 AT5G24550 479 / 1e-164 beta glucosidase 32 (.1) Lus10012871 [exp] 730 / 0 AT5G24550 466 / 1e-157 beta glucosidase 32 (.1) Lus10030576 [exp] 719 / 0 AT2G44480 400 / 6e-136 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015100 [exp] 494 / 4e-168 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 475 / 8e-161 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 468 / 5e-158 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 468 / 6e-158 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.005G059500 [exp] 467 / 4e-157 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.001G223300 [exp] 453 / 4e-152 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222904 [exp] 452 / 1e-151 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222704 [exp] 451 / 2e-151 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222900 [exp] 451 / 3e-151 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.004G110691 [exp] 444 / 1e-148 AT2G44480 524 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10011828 pacid=23165558 polypeptide=Lus10011828 locus=Lus10011828.g ID=Lus10011828.BGIv1.0 annot-version=v1.0 ATGGCTCTACAAATTGTAGTGATGATGTTTCTGCTGGCAGCTGAGATCTCTGAGTTAGGGATGATATCAGCTGATCCAATTCCAAGTGTTGACCCTTGCT CAACATCACACTACGTATACAAACCTTCTAAAGAGCTTCCCCATGGCCGTTATAGTTTCCCTCCTGGCTTTATCTTTGGCACTGCCACTTCTTCTTTTCA GATTGAGGGAGCTTCAGATTTTTCGTATGGGAAAGGTCCGAGCATTTGGGACAGATTTACCCATCAGTATCCAGAAAGGATTTTAGAAGGTGGTAATGGT GATGTAGCAATAGATCATTATCACAAATTCAAGGAAGATATTATGAAAATGAAGTATCTCAATGTTGATGCGTACAGATTCTCTATCTCATGGCCACGAA TTATACCATCTGGCAAGAGAAGTGACGGAGTTAATCAAGAAGGAATCAAATTTTACCACGACCTCCTCGATGAACTCATTGAAAATGGGATCGAGCCTTT TGTCACAATATGGCATTGGGATACCCCTCAGGCTCTTGAAGCTGAGTATGGTGGCTTTCTAAGCCGAGATATTATAAAGGATTTTGAGGATTACTGTGAC GTCTTGTTTCAAGAATATGGCTCAAAAGTAAAGAAATGGATAACTTTGAATGAACCTATGGGTAACGCAATGAAAGCCTACGATGAAGGGGTTTTCGCAC CCGGACATTGTTCTGTATGGGTTGATAGAGCATGTAAACTTGGAGACTCTTCAACTGAACCTTATATTGTTTCCCATCATCAACTTCTTGCTCATTCCGC TGCTTACCACTTATACAAAAACAAATATCAGAATCTTACTGGAGAAATAGGAATAACCTATGTCTCACATTGGTTTCTTCCTTACTCTAATACAACTGAA GATATTGATGCTGCTCACAGAGCTCAGGATTGGATGTATGGCTGGTACATGGATCCAATCACCTATGGTTATTACCCTAGAACAATGGTGGATTTATTGG GATCTCGTTTGCCCAAATTTACACTAGAAGAATCACGCTTGCTTAGAAAGTCATACGACTTTTTAGGCATCAATTATTACACTAGTTATTTTGTGAAGAA CAATGATAAATTTGATAATGCTCATCTTCGATATGCAACTGATCACCACGGCATTACTACACCTGATAGAGACGGAGTGTACATTGGACCACATTTGGGT TCATACTGGCAATATTTATATCCAGATGGTTTACGAGCATTGCTGAAGTACACTAAAGAAAAATATGATAATCCTGTCATTTACATAACTGAAAATGGAT TATCGGAGAAGGACAACGCTACACAGACACTTGAAGAGGCACTACAGGACAAGATGAGGATTGATTTTTACAACAGCCATCTTACAAGTGTTCTGCAAGC CATCAAGTCAAATCTTACTGGAGAAATAGGAATAACCTATGTCTCACATTGGTTTCTTCCTTACTCTAATACAACTGAAGATATTGATGCTGCTCACAGA GCTCAGGATTGGATGTATGGCTGGTACATGGATCCAATCACCTATGGTTATTACCCTAGAACAATGGTGGATTTATTGGGATCTCGTTTGCCCAAATTTA CACTAGAAGAATCACGCTTGCTTAGAAAGTCATACGACTTTTTAGGCATCAATTATTACACTAGTTATTTTGTGAAGAACAATGATAAATTTGATAATGC TCATCTTCGATATGCAACTGATCACCACGGCATTACTACACCTGATAGAGACGGAGTGTACATTGGACCACATTTGGGTTCATACTGGCAATATTTATAT CCAGATGGTTTACGAGCATTGCTGAAGTACACTAAAGAAAAATATGATAATCCTGTCATTTACATAACTGAAAATGGATTATCGGAGAAGGACAACGCTA CACAGACACTTGAAGAGGCACTACAGGACAAGATGAGGATTGATTTTTACAACAGCCATCTTACAAGTGTTCTGCAAGCCATCAATGAAACACAGGTAAA CGTAAAAGGGTTCTTTGCGTGGTCATTCGCAGACAACTTCGAATGGAACGAAGGGTACACAGTTAGGTTTGGGTTGTACTACGTTAACTACACCGATCTC TCCAGACACCCAAAGGACTCAGCATGCTGGTACACTAACTTCTGCAACAAGACCCAGCCGAAGACGAAGTACTTCTCTAACAAATTTGATCTTGATCAGC TCATCACCACACGTGCCGCTCCCGAAGGCCTCTCTCCTCTGCGGACCGTCTTTAATAGTGTCAATCATCAATCTTAA
AA sequence Show only first row Show all	>Lus10011828 pacid=23165558 polypeptide=Lus10011828 locus=Lus10011828.g ID=Lus10011828.BGIv1.0 annot-version=v1.0 MALQIVVMMFLLAAEISELGMISADPIPSVDPCSTSHYVYKPSKELPHGRYSFPPGFIFGTATSSFQIEGASDFSYGKGPSIWDRFTHQYPERILEGGNG DVAIDHYHKFKEDIMKMKYLNVDAYRFSISWPRIIPSGKRSDGVNQEGIKFYHDLLDELIENGIEPFVTIWHWDTPQALEAEYGGFLSRDIIKDFEDYCD VLFQEYGSKVKKWITLNEPMGNAMKAYDEGVFAPGHCSVWVDRACKLGDSSTEPYIVSHHQLLAHSAAYHLYKNKYQNLTGEIGITYVSHWFLPYSNTTE DIDAAHRAQDWMYGWYMDPITYGYYPRTMVDLLGSRLPKFTLEESRLLRKSYDFLGINYYTSYFVKNNDKFDNAHLRYATDHHGITTPDRDGVYIGPHLG SYWQYLYPDGLRALLKYTKEKYDNPVIYITENGLSEKDNATQTLEEALQDKMRIDFYNSHLTSVLQAIKSNLTGEIGITYVSHWFLPYSNTTEDIDAAHR AQDWMYGWYMDPITYGYYPRTMVDLLGSRLPKFTLEESRLLRKSYDFLGINYYTSYFVKNNDKFDNAHLRYATDHHGITTPDRDGVYIGPHLGSYWQYLY PDGLRALLKYTKEKYDNPVIYITENGLSEKDNATQTLEEALQDKMRIDFYNSHLTSVLQAINETQVNVKGFFAWSFADNFEWNEGYTVRFGLYYVNYTDL SRHPKDSACWYTNFCNKTQPKTKYFSNKFDLDQLITTRAAPEGLSPLRTVFNSVNHQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10011828 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	6.1	1.0000
					Lus10003536 [exp]	8.7	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	10.5	1.0000
					Lus10011078 [exp]	11.7	1.0000
					Lus10022518 [exp]	13.7	1.0000
					Lus10011832 [exp]	13.9	1.0000
					Lus10011425 [exp]	14.3	1.0000
					Lus10023589 [exp]	14.4	1.0000
					Lus10028667 [exp]	16.6	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	17.9	1.0000

Compare expression of checked genes

Lus10011828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.