Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25140 913 / 0 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 716 / 0 GAUT9 galacturonosyltransferase 9 (.1) AT3G61130 471 / 1e-159 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT5G47780 451 / 1e-152 GAUT4 galacturonosyltransferase 4 (.1) AT4G38270 436 / 6e-146 GAUT3 galacturonosyltransferase 3 (.1.2) AT1G18580 400 / 7e-134 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 378 / 4e-125 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT2G46480 359 / 4e-118 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G01040 331 / 5e-107 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G15470 325 / 1e-104 GAUT14 galacturonosyltransferase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003045 [exp] 692 / 0 AT3G02350 827 / 0.0 galacturonosyltransferase 9 (.1) Lus10022766 [exp] 600 / 0 AT3G25140 568 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10041389 [exp] 470 / 8e-160 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 467 / 3e-158 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 468 / 2e-157 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 448 / 8e-151 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10026546 [exp] 437 / 7e-142 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10018554 [exp] 407 / 2e-136 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10013832 [exp] 413 / 4e-128 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246500 [exp] 938 / 0 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.004G111000 [exp] 769 / 0 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.017G106800 [exp] 750 / 0 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.008G010000 [exp] 667 / 0 AT3G25140 671 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G151400 [exp] 468 / 2e-158 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 467 / 6e-158 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 436 / 8e-146 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.016G001700 [exp] 428 / 5e-143 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 423 / 8e-142 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.019G108900 [exp] 398 / 5e-133 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10011834 pacid=23169194 polypeptide=Lus10011834 locus=Lus10011834.g ID=Lus10011834.BGIv1.0 annot-version=v1.0 ATGGCGAATCACCGTGCCCTGCGTCCACCGCCGGGAGGATTCGCTCCTCGCGCCCTCCGGTTGCTCGCTTCCGCGATCGCCGTCGCCGCCTTCCTCTTCT TCGCTTCATCCTTCCTCTTCACTCCCCACTCCTCCACTTCCGACCTCCCTCACCGCTTCGGTTTGAGGAGTGATTCTTACGAATTCGGATCGGGTAGGAG ATCCGTGTTGGCATTGAAATCCGATCCGTTGAAGCCACGATTGGATCAGATCCGGAAACAAGCGGATGATCACCGGACTTTGGCTCTGGCTTATGCTTCA TACGCAAGGAAGTTGAAGCTGGAGAATTCAAAGCTTCTGAGGATCTTCGCCGATTTGTCAAGGAACTACACTGATCTGCTTCACAAGCCTCCGTACAGTG CTCTGTTCGAATCGAATTCTGCATCTATTATCGAGGAATCTACATTGAGGCAGTTTGAGAAGGAAGTCAAGGAGCGGATCAAAGTCACCCGCCAAGTGAT CTCCGAGGCGAAAGAGAGTTTCGACAACCAGCTGAAGATTCAGAAGCTGAAAGACATCATCTTTGCTGTTAACGAGCAGCTGACCAAGTCCAAGAAGCAA GGCGCGTTTTCGAGCTTGATTGCTGCGAAATCGATCCCAAAGGGGTTGCATTGTATTGCTATGCGGTTGATGGAGGAGAGGATTGCTCACCCCGAGAAGT ATTCGGACGAAGGGAAGCCTCTGGCTCCGGAGCTTGAAGATCCGAATCTTTACCATTACGCCATCTTCTCGGACAATGTGATTGCTGCTTCAGTTGTGGT GAATTCGGCGGTGAAGAATGCGAAAGAGCCATGGATGCATGTTTTTCATGTGGTGACCGATAAGATGAATCTCGGTGCGATGCAGGTTATGTTTAAGCTG AAGGATTACAATGGCGCTCACATAGAAGTGAAAGCCGTCGAGGATTACAAGTTCTTGAACTCTTCTTATGTCCCCGTGCTCAAGCAGCTCGAGTCTGCAA ATTTGCAGAGGTTTTACTTTGAGAATAAGCTCGAGAATGCTACCAAGGATACGACGAATATGAAGTTCAGGAACCCTAAGTATCTGTCCATCTTGAATCA TCTGAGATTCTATCTTCCCGAAATGTACCCAAAGTTGCATAGAATACTGTTCTTGGACGATGATATAGTCGTCCAGAAGGATTTGACAGGGTTGTGGAAG ATCGATATGGACGGAAAAGTCATTGGCGCTGTGGAGACTTGTTTCGGGTCGTTCCATCGTTATGCTCAGTACATGAATTTCTCGCACCCTTTGATCAAAG CTAAGTTCAACCCTAAAGCCTGCGCCTGGGCTTACGGGATGAACTTCTTCGATCTCGATGCTTGGAGGAGGGAGAAGTGCACGGAGGAATACCATTACTG GCAGGCTCTTAACGAGAACCGGACATTGTGGAAGCTAGGAACGCTACCTCCAGGGTTGATCACATACTACTCGACGACGAAGCCACTCGACAAGTCATGG CACGTGCTGGGGCTTGGGTACAACCCGAGCATCAGCATGGACGAGATAAGGAACGCTGCGGTGGTCCACTTCAACGGGAACATGAAGCCGTGGCTCGATA TAGCCATGACCAAGTTCAAACCGCTGTGGACAAAGTACGTAGACTACGAACTGGAGTTCGTACAGCAATGCAACTTGGGTGCCTAA
AA sequence Show only first row Show all	>Lus10011834 pacid=23169194 polypeptide=Lus10011834 locus=Lus10011834.g ID=Lus10011834.BGIv1.0 annot-version=v1.0 MANHRALRPPPGGFAPRALRLLASAIAVAAFLFFASSFLFTPHSSTSDLPHRFGLRSDSYEFGSGRRSVLALKSDPLKPRLDQIRKQADDHRTLALAYAS YARKLKLENSKLLRIFADLSRNYTDLLHKPPYSALFESNSASIIEESTLRQFEKEVKERIKVTRQVISEAKESFDNQLKIQKLKDIIFAVNEQLTKSKKQ GAFSSLIAAKSIPKGLHCIAMRLMEERIAHPEKYSDEGKPLAPELEDPNLYHYAIFSDNVIAASVVVNSAVKNAKEPWMHVFHVVTDKMNLGAMQVMFKL KDYNGAHIEVKAVEDYKFLNSSYVPVLKQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQKDLTGLWK IDMDGKVIGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQALNENRTLWKLGTLPPGLITYYSTTKPLDKSW HVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIAMTKFKPLWTKYVDYELEFVQQCNLGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10011834 [exp]	0	1
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10011815 [exp]	1.7	0.9307
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022766 [exp]	2.0	0.8949
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022767 [exp]	2.4	0.9196
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10021177 [exp]	2.8	0.9207
AT3G25130			unknown protein		Lus10011835 [exp]	3.5	0.8777
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10019414 [exp]	3.7	0.8689
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10035439 [exp]	4.2	0.8660
AT4G09810			Nucleotide-sugar transporter f...		Lus10005790 [exp]	5.1	0.8492
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10005560 [exp]	7.7	0.8895
AT1G64980			Nucleotide-diphospho-sugar tra...		Lus10024531 [exp]	8.5	0.8672

Compare expression of checked genes

Lus10011834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.