Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25130 98 / 1e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022768 [exp] 374 / 2e-127 AT3G25130 106 / 5e-25 unknown protein Lus10025905 [exp] 126 / 5e-33 AT3G25130 122 / 7e-31 unknown protein Lus10038199 [exp] 99 / 8e-24 AT3G25130 111 / 2e-28 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246400 [exp] 116 / 4e-29 AT3G25130 140 / 4e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011835 pacid=23169230 polypeptide=Lus10011835 locus=Lus10011835.g ID=Lus10011835.BGIv1.0 annot-version=v1.0 ATGTCTGAAATCTCAGCACTTGTTCTCTCAGACATCCACAAACTACTCACATCCCTCATCTCAAACCCCATCTACTTATCTTACTTCCTCTTCTTCTCCC CTTCTTTACTCAAGCTCATCTCCTTCCTTTCCCCTCTCTTCCTCACCACTCTTCTCCTCCTCACCTTCTCCCCTTATCTCGAAACCCCTTGCAACAACTT CGAAAACGACAACAGCGACGGAACCATCCATGCTAGCCAGGAAGCTCTCCAAGTATACAGCATTGTGTTTGATGTTGGAGACCAACAAGTCCAGTATTCA CAATTGGGTAGCCATGGTTCACCCAAAGATGAGAGCTTTTCCCAATTGGGTAACCATGGTCCACCCAGAGATGAGAACTTTTCGAAATTGGGTCGCTGCG GTTCATTCAAAGATCAGAAGTTTACCCAACTGGGTAGCTATGTTTCACTCAAAGATGAGAACTTTACGAAATTGGGCAACCATGGTTCACCCAAAGATGA GAACTTTAGCCAATTGGGTAACTATGGTTCACCCAAAGATGAGAAATTTTCCCAACTGTGTAGCTATGGTTCACTCAAAGATGAGAACTTTACCCAATTG GGTAGCTATGGGTCAATGAGGAAGGACAAAGTGGAGTGGAGGAGGACACTTGCTTGCAAGCTGTTTGAAGAGAGGCACCACAGCAATTCTGCAGAAGGGA TGGATCTGCTTTGGGAGGCACATGATCATGATGATGAGAAGAAGAAGAAGAAGAAGATATCAGTAGTTACAAAGAGCAAGAAGGGTAACAAGATTGGACA CCACTGTTATGAGGATGAAGAAGAAGAAGAAGATGAGATGAGTTGGAATGATGATGGTGGTGGGAAACTGTGTTGTTTGCAGGCATTGAAGCTGTCAGCT GGGAAGATGAATAACCTTGCTGGGATTGGGAAGCCTAGTCTTGTCAAGTTCACCAAGGCTGTTAAAGGGTTTGGTTGGCTTCATAGTAGTAGGCATTCCA AGAACAAAAGGGTGTCTCTTTGA
AA sequence Show only first row Show all	>Lus10011835 pacid=23169230 polypeptide=Lus10011835 locus=Lus10011835.g ID=Lus10011835.BGIv1.0 annot-version=v1.0 MSEISALVLSDIHKLLTSLISNPIYLSYFLFFSPSLLKLISFLSPLFLTTLLLLTFSPYLETPCNNFENDNSDGTIHASQEALQVYSIVFDVGDQQVQYS QLGSHGSPKDESFSQLGNHGPPRDENFSKLGRCGSFKDQKFTQLGSYVSLKDENFTKLGNHGSPKDENFSQLGNYGSPKDEKFSQLCSYGSLKDENFTQL GSYGSMRKDKVEWRRTLACKLFEERHHSNSAEGMDLLWEAHDHDDEKKKKKKISVVTKSKKGNKIGHHCYEDEEEEEDEMSWNDDGGGKLCCLQALKLSA GKMNNLAGIGKPSLVKFTKAVKGFGWLHSSRHSKNKRVSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25130			unknown protein		Lus10011835 [exp]	0	1
AT3G25130			unknown protein		Lus10022768 [exp]	1.0	0.9386
AT4G34215			Domain of unknown function (DU...		Lus10014097 [exp]	2.4	0.8542
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10011834 [exp]	3.5	0.8777
AT2G34585			unknown protein		Lus10038503 [exp]	6.9	0.8016
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10035020 [exp]	7.7	0.8054
					Lus10037878 [exp]	8.7	0.8312
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022766 [exp]	11.0	0.8027
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022767 [exp]	11.2	0.8188
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10019414 [exp]	13.9	0.8194
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	16.3	0.8212

Compare expression of checked genes

Lus10011835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.