Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27870 161 / 1e-41 Vacuolar iron transporter (VIT) family protein (.1) AT4G27860 155 / 2e-40 vacuolar iron transporter (VIT) family protein (.1), vacuolar iron transporter (VIT) family protein (.2) AT5G24290 155 / 2e-40 Vacuolar iron transporter (VIT) family protein (.1), Vacuolar iron transporter (VIT) family protein (.2) AT4G27850 43 / 0.0005 Glycine-rich protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022771 [exp] 823 / 0 AT4G27870 155 / 4e-41 Vacuolar iron transporter (VIT) family protein (.1) Lus10035731 [exp] 122 / 6e-29 AT4G27870 136 / 2e-33 Vacuolar iron transporter (VIT) family protein (.1) Lus10037315 [exp] 115 / 7e-27 AT4G27870 135 / 2e-33 Vacuolar iron transporter (VIT) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G127900 [exp] 214 / 1e-61 AT4G27870 182 / 2e-49 Vacuolar iron transporter (VIT) family protein (.1) Potri.012G004000 [exp] 211 / 4e-58 AT4G27870 126 / 1e-29 Vacuolar iron transporter (VIT) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [flax] [poplar] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Lus10011838 pacid=23169231 polypeptide=Lus10011838 locus=Lus10011838.g ID=Lus10011838.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCAGTTGCAGAGCAGCAGCAAGAATGGGGAGTCGAACAGGAAGGGGAAGAAGCTGCTGAGCCCTTGAAAGGGAGGCAACAACAGAAGATTC TACCCACTAGCTATGCTGAAGTGGCTGCCATGGAAGCACCGCCACCATCTTCTAACGGGAATGGAAGCCATGGACTGTTTCCAGCTCTTACTGAGAAGCC ACAACCCATTACAGAAGAAGAAGATGAACCTCCAGTGGAAATTCCAGATTCTTCCACAGACAGCATCCAGACCAATAATGGTGCATCTGAGGCTGTCAGT GACACAAATAGCTACACCATAACAACCACCGTATCCAAGACTGTGATTCTTCCAACCAAACTTGTTGAGAAGCAGAACAAAGAGGTTGTTTTTGCTGCAT CTTCCTCTTCAGTTAGACAGGAGGAGACTGAAGTGGTGCTGGAGAGAGTGTATCCGAAGGCTGCAACTCAAGAGTTCTTCTGTCCTAACTGCCAGTCTTG CATCCAGAAGGTTGTTCTTCGTGACCGGCCTGTTCCTTCTCGTCCACAGCGTACCTTCAGATGTGCTGACTGCTTTGCTTTCCTCATTCCTGTAGGGAAC TGGATCTTTGGTAGTAGAGGACAGGATGATGATTATGACATTATAACTGATCAAGTTGATACCGGTGTTCCGCGAGGAACACAACCACCACCTAGGGGCT CATCAGCGAACAAAGCTCCCTCCACCGGGGTAGTTCCTGATCAAGGGAAAGCTCCTCTGTCTGCTGTACCTTCACCAGCATTACCTGGTCATGGTAAAGC TCCACTCAATGGCTCAACATTTGAGGCAAAGCCAGCATCTTCAGAAGTAGCAGGAAAGGAAGCAAATGGCCATGTCTCAGTTACAAGTAGAGATCCGTCA GTTACTTGGAATTCTGAAAGCTCAGGCAACAGCAAAGAGCCACGTCAGCCTGGAAAAGACTCTGACAATATTGAAGTTGTGATTGATGAAGGGACAGTTT CAGTTGATGTGACCAAAGACAAGCACAAAGGTTCGAAAGGCATCCTTGGTGTTCTGATCAGTAAGCTACCAGGAATGGGAGCACAGCAGCTAGGGGAACT CAACCAAGGACTTCTGGATGTGATTGAAGATTCACACAAGACCGGAAGTCAACTTCCTGTCTCGTCCCCAACTACCGGTGAGACACCAGCACCGATTCCT GGAACTTCGGAGGATACTGTTGTAACATCTCAGCCGCCTATGATCCGACCACCAAGAGTAGCTTGGGAGTGGGACATCTTGAAGAGCATTGTCTATGGTG GTTTAGCTGAGTTGATCACCAGTCTCAGCATTGTCACATCTGCTGCTAGTGCTGACACTGAGACTTTGAAAATCTTGGCCATTGGTGTAGCCAACCTCAT TGGCGGCCTTTTCATCCTCACAACCAATATTTGGGACCTGCGGTGCGAGCAGCCAAGGAAACTCGTCGTGACCTCGATCGAAACTCAGTCGGAATCAGAA GAAGTCGACAGGTACTGCGACAACCTAGGCAAAAGGACCAACTTCAAGCGCCACACAATCTTCGCAGTGCTCTCATTCCTCGTGTTCGGCCTTATCCCGC CTGTTGTCTACGGATTCTCGTTCAAGGAGAGCGACGACCGCGACTACAAGATCGCAGCAACCGCTGCAGCATCTCTCGTCTGCGTGTTCCTGCTCGCCAT CGGGAAGGCTCATGCGCAGAAGCCGCCAAAGACTTACTTGAAGTCTGTGGCTTTCTATGTCACGGCTGGAGTCATGGCTTCAGGGGTGTCTTTCCTGGCG GGCGAGCTTTTCAAGAAGGTTATGGACGATCTTGGTACGTTCGCTCCGGTTGCAGAAGCTCCCCCTGCTGCTCCAGGGCTTGGTAATTGGGCAGCATACT GA
AA sequence Show only first row Show all	>Lus10011838 pacid=23169231 polypeptide=Lus10011838 locus=Lus10011838.g ID=Lus10011838.BGIv1.0 annot-version=v1.0 MAAAVAEQQQEWGVEQEGEEAAEPLKGRQQQKILPTSYAEVAAMEAPPPSSNGNGSHGLFPALTEKPQPITEEEDEPPVEIPDSSTDSIQTNNGASEAVS DTNSYTITTTVSKTVILPTKLVEKQNKEVVFAASSSSVRQEETEVVLERVYPKAATQEFFCPNCQSCIQKVVLRDRPVPSRPQRTFRCADCFAFLIPVGN WIFGSRGQDDDYDIITDQVDTGVPRGTQPPPRGSSANKAPSTGVVPDQGKAPLSAVPSPALPGHGKAPLNGSTFEAKPASSEVAGKEANGHVSVTSRDPS VTWNSESSGNSKEPRQPGKDSDNIEVVIDEGTVSVDVTKDKHKGSKGILGVLISKLPGMGAQQLGELNQGLLDVIEDSHKTGSQLPVSSPTTGETPAPIP GTSEDTVVTSQPPMIRPPRVAWEWDILKSIVYGGLAELITSLSIVTSAASADTETLKILAIGVANLIGGLFILTTNIWDLRCEQPRKLVVTSIETQSESE EVDRYCDNLGKRTNFKRHTIFAVLSFLVFGLIPPVVYGFSFKESDDRDYKIAATAAASLVCVFLLAIGKAHAQKPPKTYLKSVAFYVTAGVMASGVSFLA GELFKKVMDDLGTFAPVAEAPPAAPGLGNWAAY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27870			Vacuolar iron transporter (VIT...		Lus10011838 [exp]	0	1
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10020835 [exp]	2.0	0.9194
AT5G59790			Domain of unknown function (DU...		Lus10040860 [exp]	3.9	0.8863
AT2G24370			Protein kinase protein with ad...		Lus10040573 [exp]	4.4	0.9297
AT2G20030			RING/U-box superfamily protein...		Lus10034953 [exp]	10.5	0.9084
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10003365 [exp]	13.4	0.8994
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10002689 [exp]	14.4	0.8970
AT3G02645			Plant protein of unknown funct...		Lus10019721 [exp]	19.5	0.8966
AT1G71740			unknown protein		Lus10029742 [exp]	19.6	0.8977
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	22.9	0.9073
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	24.8	0.9067

Compare expression of checked genes

Lus10011838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.