Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25110 503 / 2e-179 ATFATA fatA acyl-ACP thioesterase (.1) AT4G13050 500 / 2e-178 Acyl-ACP thioesterase (.1) AT1G08510 263 / 1e-84 FATB fatty acyl-ACP thioesterases B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022772 [exp] 736 / 0 AT3G25110 493 / 8e-176 fatA acyl-ACP thioesterase (.1) Lus10025912 [exp] 604 / 0 AT3G25110 503 / 1e-179 fatA acyl-ACP thioesterase (.1) Lus10038190 [exp] 561 / 0 AT3G25110 493 / 1e-175 fatA acyl-ACP thioesterase (.1) Lus10033072 [exp] 266 / 7e-86 AT1G08510 605 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10017751 [exp] 266 / 8e-86 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10007942 [exp] 249 / 5e-79 AT1G08510 288 / 6e-94 fatty acyl-ACP thioesterases B (.1) Lus10013480 [exp] 243 / 6e-77 AT1G08510 287 / 2e-93 fatty acyl-ACP thioesterases B (.1) Lus10000365 [exp] 238 / 7e-75 AT1G08510 274 / 2e-88 fatty acyl-ACP thioesterases B (.1) Lus10034617 [exp] 238 / 1e-74 AT1G08510 275 / 6e-89 fatty acyl-ACP thioesterases B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G245600 [exp] 536 / 0 AT3G25110 521 / 0.0 fatA acyl-ACP thioesterase (.1) Potri.012G101500 [exp] 267 / 2e-86 AT1G08510 329 / 4e-110 fatty acyl-ACP thioesterases B (.1) Potri.018G072700 [exp] 263 / 2e-84 AT1G08510 611 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G155800 [exp] 262 / 4e-84 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G157200 [exp] 262 / 4e-84 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.015G099600 [exp] 259 / 1e-83 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 251 / 2e-80 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.010G117400 [exp] 247 / 2e-78 AT1G08510 294 / 2e-96 fatty acyl-ACP thioesterases B (.1) Potri.001G177600 [exp] 208 / 1e-63 AT1G08510 343 / 2e-115 fatty acyl-ACP thioesterases B (.1) Potri.001G177900 [exp] 207 / 3e-63 AT1G08510 339 / 5e-114 fatty acyl-ACP thioesterases B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF01643 [flax] [poplar] Acyl-ACP_TE Acyl-ACP thioesterase
Representative CDS sequence Show only first row Show all	>Lus10011839 pacid=23169254 polypeptide=Lus10011839 locus=Lus10011839.g ID=Lus10011839.BGIv1.0 annot-version=v1.0 ATGCTGTCGATGAAGCTTTCTCCCTGCAATGTAACGGATTTCCAAATCCACGCATTTCTCCCCCAATGCCGATTCCAGCCTCAAACCACCCGCCCCTGTT TCCCGCCTCGTCGGAGCTCTGTTTCCTCCGCCGTGTGTAAGGCGGTTGACACCGGAGTTGCAGCGGCGGCTGCGGCGATTCAATCCGGGTCGGAGAAGGA AAAGACGGGGATCTTGGCTGATAGGCTGCGGCTTGGGAGCTTGACGGAGGATGGGCTGTCGTATAAGGAGAAGTTCATCGTCAGGTGCTATGAAGTTGGG ATTAACAAGACCGCCACTGTTGAGACCATTGCCAATCTCTTGCAGGAGGTGGGGTGCAACCACGCTCAGAGTGTTGGATTCTCGACAGACGGATTCGCTA CAACTCCCACAATGAGGAAGCTGCATCTCATTTGGGTGACTGCTCGGATGCACATTGAGATTTACAGATACCCAGCTTGGAGTGATGTAGTCGAAATCGA GACGTGGTGCCAAAGTGAAGGTAGGATCGGTACCAGGCGCGACTGGATCATCAAGGACTATGCTAATGGTGAAGTCATTGGGCGAGCTACTAGCAAATGG GTGATGATGAACCAAGATACCAGGCGGCTTCAGAAAGTCAACGATGAAGTTCGGGAGGAGTACTTAGTCTTCTGTCCCCGTGAACCGAGACTATCGTTCC CCGAGGAAAACAACCGGAGCTTGAAGAAGATTTTGAAACTAGAAGATCCTGCTCAGTATTACAGACTCGGACTCGTGCCAAGAAGAGCTGATCTGGACAT GAACCAGCATGTCAACAACGTGGCATACATCGGATGGGTTCTCGAGAGCATGCCTCAAAAAGTCATCGACACGCACGAACTGCAATCAATCACCCTAGAC TACAGAAGGGAATGCCAACACGACGATGTGGTCGATTCGCTGACCGGTTTAGAACCCATGGACGAGTCCGAGTCAAAGTCCAAGAAAACCAATGGCTCCG CTGCCCTGTCACTTTCTGTTCACTGCAAAGAAGAGTCCCTCAACTTCCTGCACCTGCTTAGACTGGCAGGTGACCAAGGGCTTGAGATAAACCGCGGCAG AACTGAATGGAGAAAGAAGCTAGGAAGATGA
AA sequence Show only first row Show all	>Lus10011839 pacid=23169254 polypeptide=Lus10011839 locus=Lus10011839.g ID=Lus10011839.BGIv1.0 annot-version=v1.0 MLSMKLSPCNVTDFQIHAFLPQCRFQPQTTRPCFPPRRSSVSSAVCKAVDTGVAAAAAAIQSGSEKEKTGILADRLRLGSLTEDGLSYKEKFIVRCYEVG INKTATVETIANLLQEVGCNHAQSVGFSTDGFATTPTMRKLHLIWVTARMHIEIYRYPAWSDVVEIETWCQSEGRIGTRRDWIIKDYANGEVIGRATSKW VMMNQDTRRLQKVNDEVREEYLVFCPREPRLSFPEENNRSLKKILKLEDPAQYYRLGLVPRRADLDMNQHVNNVAYIGWVLESMPQKVIDTHELQSITLD YRRECQHDDVVDSLTGLEPMDESESKSKKTNGSAALSLSVHCKEESLNFLHLLRLAGDQGLEINRGRTEWRKKLGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10011839 [exp]	0	1
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10004868 [exp]	2.2	0.9608
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10039636 [exp]	3.5	0.9419
AT3G56130			biotin/lipoyl attachment domai...		Lus10009843 [exp]	5.3	0.9443
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10004554 [exp]	7.7	0.9316
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	11.6	0.9424
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Lus10035136 [exp]	14.7	0.9042
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007385 [exp]	16.4	0.9409
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10019400 [exp]	17.6	0.9418
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	19.6	0.9130
AT5G54970			unknown protein		Lus10032643 [exp]	21.9	0.9271

Compare expression of checked genes

Lus10011839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.