Plant FIBer expression Database

Lus10011840 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G25100 831 / 0 CDC45 cell division cycle 45 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022775
[exp]
1077 / 0 AT3G25100 894 / 0.0 cell division cycle 45 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G090600
[exp]
915 / 0 AT3G25100 918 / 0.0 cell division cycle 45 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02724 CDC45 CDC45-like protein
Representative CDS sequence
>Lus10011840 pacid=23169196 polypeptide=Lus10011840 locus=Lus10011840.g ID=Lus10011840.BGIv1.0 annot-version=v1.0
ATGGTGAGGGAGCAAAAAGTGGAGTCATTCTACGCTAGCCTTCGTGAGTCAGTCTCAGCTTCATCGTACTCTCCACTGCTCATATTCCCGTCAACATCTG
ACGTTGACTCACTCTGTGCACTCAAGATAATCTTCAACGTCCTGGAGTCCGATTCGGTCCGGTACGCTTGCTATCCCGTCTCTTCATTCCAAGAGATCCA
CAAGTACGCCGGTGAGGATTTGACTTCCTCTTCCTCCTCAAACCCCATTTCCATCCTTTTAGTGAATTGGGGATGCCAGAGGGATTTGAGGAGGTTGCTC
CAGTTGGGACCCGGGGTCCGGGTTTTTGTAGTGGATAGTCACCGTCCTATCCATTTGCACAACTTGAATGATCAGAATCAGAACGTTGTGGTGCTCTATA
CTAGGGAGGATGAGAGGCAAGCTGACTTGGCTTATGATTTCTCTGATGCTGCTCATGATTTCGATGTTTCTGCTTTGGCGAATGCTGGTGACTTGAATAG
CGATGATGAAGGTGACGATGATGATGAGAGCTCTGATAGTGATAAGGATAGTGACAGTGATGAGGATGACGATGGAGAAGATGGCAGGACAGGGAAGAGA
AGAAAGGTTATGAAAGATGATGGAAATGATCCAGTTCAGCTGTATAAGAAGCTGAAGAGGGAGTATTACAGTATGGGAACTTTCCATGGGAAGCCATCTG
GGTGTTTGATGTATGAACTGTCGCATTCGTTGAGGAAGAACACGAACGAGCTGCTTTGGTTGGCTTGCGTTTCGTTAACTGATCAGTTCGTCCACGAGAG
ATTGACAGACGAGAGGTACCAAGCTGGAGTGATGGAGCTGGAACAGCACATCAACAGTCTGGGAAATCTGGAGGCGGTTAGTTCAGTTACACTAAAAGAT
GGAACAAAAATCCGAGCACCGGAGGCATCACGTATATCGTATGAAGACGAGCCAAGGCTGATGCTTTTGAGGGAGTGGAACCTGTTCGATTCGATGCTGT
GCTCATCCTACATTGCTCCGAAGCTCAAGACATGGAGCGACAACGGTATGAAGAAGCTCAAGCTTCTCCTAGCCAGGATGGGGTTTGCATTAGTCGACTG
CCAGCAGAAGTTCCAGTATATGAACCTCGAAGTGAAAAGAAAGATGAAAGACGAATTTGCCCGGTTCCTACCTGAGTACGGTCTAACCGAATTCTACTAC
AGAAGCTTCCTCAGACTCCATGGTTACAGCTCCAGAGTCTCGGCAGCTGATGTAGTCTACGGAGTTACAGCATTGCTGGAATCATTCGTCAACTCCGACG
GATCCTGTGCATCCAAGCAATTCGGAGAGGCTTACGACGCTCTTTCATTAAACAATCTAGACAAGTTACGAGACGGAATGCAGAAGGCGATTAAGGTGCA
GAGAGCGATTCTAAAGCAAGGAAGCGGAGCCATAACCAGAAGCGGCTGCGTGAGAAGTGGTAGGAAGTTCAGGTGGGTGAAACTGGAGGACTCTGTGGAT
AGTCATCTGCTGGGATATCCACAGGCGCTGACGAAATTCTGTTACTTTCTGATGGATGCTTTGAGGGAGAAAGGTGCGAGGCCGAAGCCGTTGATATGCG
CTTGTCTTTCGCCGGATGTGGAGAAGATGCTGATCGTTGGAGTCTGCGGGAAGCCTAGACTGGGAGCTTTGAAAGGGAATGCCTTTGGTGCGGCGTTCAG
GAATGCTGCGGAGGAGATTGGAGCTGTGTATTTCCATGAGTTGTTTGAGTCTTCTTGGATTGTTTTGGAGAAGAGGAGGGTTAATGACTTCATGATCAAA
ATAACTGAGAAGCTCTGA
AA sequence
>Lus10011840 pacid=23169196 polypeptide=Lus10011840 locus=Lus10011840.g ID=Lus10011840.BGIv1.0 annot-version=v1.0
MVREQKVESFYASLRESVSASSYSPLLIFPSTSDVDSLCALKIIFNVLESDSVRYACYPVSSFQEIHKYAGEDLTSSSSSNPISILLVNWGCQRDLRRLL
QLGPGVRVFVVDSHRPIHLHNLNDQNQNVVVLYTREDERQADLAYDFSDAAHDFDVSALANAGDLNSDDEGDDDDESSDSDKDSDSDEDDDGEDGRTGKR
RKVMKDDGNDPVQLYKKLKREYYSMGTFHGKPSGCLMYELSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSLGNLEAVSSVTLKD
GTKIRAPEASRISYEDEPRLMLLREWNLFDSMLCSSYIAPKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFARFLPEYGLTEFYY
RSFLRLHGYSSRVSAADVVYGVTALLESFVNSDGSCASKQFGEAYDALSLNNLDKLRDGMQKAIKVQRAILKQGSGAITRSGCVRSGRKFRWVKLEDSVD
SHLLGYPQALTKFCYFLMDALREKGARPKPLICACLSPDVEKMLIVGVCGKPRLGALKGNAFGAAFRNAAEEIGAVYFHELFESSWIVLEKRRVNDFMIK
ITEKL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G25100 CDC45 cell division cycle 45 (.1) Lus10011840
[exp]
0 1
AT1G65470 NFB2, FAS1 NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10008729
[exp]
1.4 0.9664
AT5G44635 MCM6 MINICHROMOSOME MAINTENANCE 6, ... Lus10038384
[exp]
3.2 0.9654
AT5G27240 DNAJ heat shock N-terminal dom... Lus10036769
[exp]
3.5 0.9610
AT1G67040 unknown protein Lus10033565
[exp]
3.7 0.9591
AT3G25100 CDC45 cell division cycle 45 (.1) Lus10022775
[exp]
3.9 0.9617
AT5G46280 MCM3 MINICHROMOSOME MAINTENANCE 3, ... Lus10025389
[exp]
6.2 0.9626
AT3G16730 HEB2 hypersensitive to excess boron... Lus10009771
[exp]
6.5 0.9527
AT5G08020 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA... Lus10021153
[exp]
7.5 0.9618
AT5G43530 Helicase protein with RING/U-b... Lus10041156
[exp]
8.1 0.9541
AT4G02110 transcription coactivators (.1... Lus10010017
[exp]
8.7 0.9525

Lus10011840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.