Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07170 186 / 6e-57 Sterile alpha motif (SAM) domain-containing protein (.1) AT3G25070 143 / 4e-40 RIN4 RPM1 interacting protein 4 (.1) AT5G48680 138 / 2e-38 Sterile alpha motif (SAM) domain-containing protein (.1) AT5G48657 55 / 2e-08 defense protein-related (.1.2) AT5G55850 52 / 4e-08 NOI RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) AT1G70180 54 / 9e-08 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) AT2G04410 48 / 4e-07 RPM1-interacting protein 4 (RIN4) family protein (.1) AT2G17660 47 / 4e-07 RPM1-interacting protein 4 (RIN4) family protein (.1) AT5G63270 47 / 6e-07 RPM1-interacting protein 4 (RIN4) family protein (.1) AT3G48450 47 / 1e-06 RPM1-interacting protein 4 (RIN4) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022776 [exp] 404 / 6e-141 AT3G25070 155 / 4e-47 RPM1 interacting protein 4 (.1) Lus10022780 [exp] 323 / 3e-110 AT3G07170 219 / 5e-73 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10038185 [exp] 246 / 4e-80 AT3G07170 234 / 9e-79 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10025917 [exp] 163 / 2e-48 AT3G07170 157 / 3e-49 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10014516 [exp] 63 / 1e-10 AT1G70180 80 / 1e-16 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10030825 [exp] 61 / 5e-10 AT1G70180 104 / 8e-25 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10030661 [exp] 60 / 1e-09 AT1G70180 102 / 6e-24 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10022524 [exp] 50 / 9e-08 AT2G04410 104 / 2e-31 RPM1-interacting protein 4 (RIN4) family protein (.1) Lus10014574 [exp] 49 / 1e-07 AT5G55850 76 / 1e-19 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G245400 [exp] 261 / 6e-85 AT3G25070 169 / 3e-52 RPM1 interacting protein 4 (.1) Potri.002G244700 [exp] 227 / 1e-72 AT3G07170 213 / 1e-70 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.014G190800 [exp] 223 / 4e-71 AT3G07170 218 / 1e-72 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.004G002500 [exp] 71 / 5e-14 AT3G25070 75 / 1e-16 RPM1 interacting protein 4 (.1) Potri.011G022000 [exp] 68 / 7e-13 AT3G25070 74 / 6e-16 RPM1 interacting protein 4 (.1) Potri.008G193300 [exp] 59 / 2e-09 AT1G70180 122 / 3e-31 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Potri.001G338500 [exp] 52 / 8e-09 AT5G40645 82 / 1e-22 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.010G036500 [exp] 57 / 1e-08 AT1G70180 134 / 1e-35 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Potri.015G089201 [exp] 52 / 2e-08 AT2G04410 90 / 1e-25 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.012G092601 [exp] 52 / 4e-08 AT2G04410 78 / 3e-20 RPM1-interacting protein 4 (RIN4) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05627 [flax] [poplar] AvrRpt-cleavage Cleavage site for pathogenic type III effector avirulence factor Avr CL0003 [flax] [poplar] SAM PF00536 [flax] [poplar] SAM_1 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Lus10011841 pacid=23169200 polypeptide=Lus10011841 locus=Lus10011841.g ID=Lus10011841.BGIv1.0 annot-version=v1.0 ATGTATGCTGATCGAGTTGAAGCCTCGGGGAAGATGTCCGTCAAGGAGCGTCTCAATGGCAGCTCTCTCGGCGACTCTTCTCGCCGGAAACAAGTCACCG GTAAAAGGCAAAGGCAAGGTGACAAGTGGGAGCACGATCTCTACAATAATGAACCGCGTACTTCAAACCGTAGAATCGATGGTCAAGATCTTCGACTGAA GCTGCAGAAGAAGAACGCATCAGCTCCTGCTGAAAGTGGGAGAAGAAGTGGCGTGCGAGATTTGCGAGAGAAGCTATCTGGAACGATGAATCCACAACCA GTGAATGCTGATCCTCCGAAGTTGAATAGGAGAAGCGCTGCTGTTGAAGCTCCTCAACCCGAGGTTAAGAAAGTTGCCACCGTAGGAGCCAAAAAGAAGG CCCAGCAAAAGGCAAATGTATCAACAGTGGACAGCTTTTTGCAGTCATTGGGTCTTGAAAAATACCTGATCACTTTCCAGGCTGAGGAAGTTGACATGAC TGCTCTCCTACACATGACTGATGATGATCTCAAGGCTATGGGAGTTCCAATGCAGCAGCAGCGTTCACATGTTCCCAAGTTTGGCAACTGGGAAAGCGAC GATAACGTCCCTTACACACAATATTTCGACAAGGCCAGGAAGGGTCGAACTGGTGGTAAGATGATAAACCCAAACGATCCAATGGAGAATCCCGATTTGC TCGTTGAGCAAACACCTTCTGCTCCTAAGGTCAGAGTCGAATCGGAGGAGCCACCTGCTGCTGGGCAGGTCAATGTTCGAAAAGCACATGAGCGTAGAAG GAGTAGGGAAGACATCGAATTCAAGCAGCCTATGGGATCTCCAGCACGCACTGAGAATGCAAATCGCAGAGCTGGTTCTGGAGGAGGGCGTGGTGGGAGT GGAGCAGGTAGCCGCCCTGCACGAAACAGCGGTGGTTCCGACAACAGCTTCGAGAAGTCGCCACTCCATCCGCACGCCAGGGTGTCGGGGCGTGGCAGTA GTGCACCCTCGCCTGTCTGGGAAGGGAAGAGCTCTCAGGAGAATAGCCACAGCACTCCTGGAAGGTCCAGGATGAGAACAAAAGGCGACGGAAGTCCTGA TCAGAGTTCGGCTGTACCGAAATTCGGTGACTGGGACGAGAACAACCCTGCATCTGCAGATGGATACACTCACATCTTCAACAAGGTGAGGGAAGAGAGA CTCGGTGGTGGAGCGGCTGGAAGGTCACCTGGTGGATCGTACGGCGACTCGTCCTATGGCAATGCTCGGAAGCACAAATCGGGGAAAACCTCCATGAATT GCTGCTTTCCATGGGGACGAAAATGA
AA sequence Show only first row Show all	>Lus10011841 pacid=23169200 polypeptide=Lus10011841 locus=Lus10011841.g ID=Lus10011841.BGIv1.0 annot-version=v1.0 MYADRVEASGKMSVKERLNGSSLGDSSRRKQVTGKRQRQGDKWEHDLYNNEPRTSNRRIDGQDLRLKLQKKNASAPAESGRRSGVRDLREKLSGTMNPQP VNADPPKLNRRSAAVEAPQPEVKKVATVGAKKKAQQKANVSTVDSFLQSLGLEKYLITFQAEEVDMTALLHMTDDDLKAMGVPMQQQRSHVPKFGNWESD DNVPYTQYFDKARKGRTGGKMINPNDPMENPDLLVEQTPSAPKVRVESEEPPAAGQVNVRKAHERRRSREDIEFKQPMGSPARTENANRRAGSGGGRGGS GAGSRPARNSGGSDNSFEKSPLHPHARVSGRGSSAPSPVWEGKSSQENSHSTPGRSRMRTKGDGSPDQSSAVPKFGDWDENNPASADGYTHIFNKVREER LGGGAAGRSPGGSYGDSSYGNARKHKSGKTSMNCCFPWGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10011841 [exp]	0	1
AT2G32190			unknown protein		Lus10039015 [exp]	1.0	0.9452
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10014418 [exp]	4.2	0.9327
AT2G32070			Polynucleotidyl transferase, r...		Lus10018330 [exp]	4.2	0.9360
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10025024 [exp]	4.5	0.9287
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10011064 [exp]	10.0	0.9027
AT3G11810			unknown protein		Lus10037134 [exp]	14.5	0.9084
AT1G72460			Leucine-rich repeat protein ki...		Lus10008128 [exp]	15.7	0.8771
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10010005 [exp]	16.7	0.9211
AT4G27290			S-locus lectin protein kinase ...		Lus10014810 [exp]	17.0	0.9189
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	18.2	0.9271

Compare expression of checked genes

Lus10011841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.