Plant FIBer expression Database

Lus10011843 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07150 118 / 1e-33 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G244400
[exp]
147 / 9e-45 AT3G07150 134 / 2e-39 unknown protein
PFAM info
Representative CDS sequence
>Lus10011843 pacid=23169192 polypeptide=Lus10011843 locus=Lus10011843.g ID=Lus10011843.BGIv1.0 annot-version=v1.0
ATGTCGTCATCAAGCAGCAACAGCGAGCCAAGAACAGTGAAGCTGCTCTGCCCTGCGCTGTCGAGGTCTAATACGGTACCGTACGCGGCGTGGGAGGAGC
AGAGACTTGATTTAAGCTCCATAGCCATGGCGTTTGGACTGGAGCCGCGGACTTTGAAGCTCAACGGTCACTTTATCGGCAGAGGATCCGACCTAATTTC
GTCCATGACTTGGAGATCGCTTCTGAATTACTTCTCCGGCAAGGGGCTCCCCACCGGGACAAGCGACCGGGAAGCGCTGATCGTCGAGGGCAAGCTGAGC
AAAGTTGGGACCAAAAGAGGGCAAGGAAGAATAAAGAGGAAGCTTGCGATCACTGAAGATATCAATCTGCTGAAGAAACTGAAACTCGAGGAAACCAATT
CTCCTTGTAAAGAAGTCGGAGGAAAGGAGAGCCAGGACGGCCATGGCACAGCGGCGGCGGCCGCAGTTGATCAGCATGAAGCGGATGAGGGAAGAAGACG
GGTTGTTACTTCTCCATGTTGTTCCTTGCAAAAGGATCTACTGATACTTGAATTACGAATCTAA
AA sequence
>Lus10011843 pacid=23169192 polypeptide=Lus10011843 locus=Lus10011843.g ID=Lus10011843.BGIv1.0 annot-version=v1.0
MSSSSSNSEPRTVKLLCPALSRSNTVPYAAWEEQRLDLSSIAMAFGLEPRTLKLNGHFIGRGSDLISSMTWRSLLNYFSGKGLPTGTSDREALIVEGKLS
KVGTKRGQGRIKRKLAITEDINLLKKLKLEETNSPCKEVGGKESQDGHGTAAAAAVDQHEADEGRRRVVTSPCCSLQKDLLILELRI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07150 unknown protein Lus10011843
[exp]
0 1
AT3G25230 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rota... Lus10025888
[exp]
5.7 0.8446
AT2G32120 HSP70T-2 heat-shock protein 70T-2 (.1.2... Lus10041207
[exp]
7.8 0.8571
AT1G16810 unknown protein Lus10026960
[exp]
13.0 0.8407
AT2G35900 unknown protein Lus10021249
[exp]
13.0 0.8237
AT3G12050 Aha1 domain-containing protein... Lus10021072
[exp]
13.7 0.8444
AT5G07330 unknown protein Lus10018040
[exp]
15.3 0.8346
AT1G11840 ATGLX1 glyoxalase I homolog (.1.2.3.4... Lus10002943
[exp]
18.0 0.8109
AT5G49910 CPHSC70-2EATSHO... HEAT SHOCK PROTEIN 70-7, chlor... Lus10037357
[exp]
21.7 0.8357
AT4G39520 GTP-binding protein-related (.... Lus10006801
[exp]
24.0 0.8040
AT3G03310 ATLCAT3 ARABIDOPSIS LECITHIN:CHOLESTER... Lus10026853
[exp]
24.0 0.8097

Lus10011843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.