Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48170 158 / 3e-50 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022783 [exp] 218 / 2e-74 AT1G48170 177 / 3e-58 unknown protein Lus10022781 [exp] 218 / 2e-74 AT1G48170 177 / 3e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G099700 [exp] 167 / 1e-53 AT1G48170 191 / 4e-63 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011844 pacid=23169234 polypeptide=Lus10011844 locus=Lus10011844.g ID=Lus10011844.BGIv1.0 annot-version=v1.0 ATGGAGAATTCCGGCGGGGAACTGGGAATCCACTGTTTCACAGAAGTGGTCGATGAAGTCACTCTCCATTTCCAGATCATCCGACTCCCCAAGCAGATAT ACGCATGGATCGGTTGCAATTCCTCCAAGTTGGGTCACCTTTATGCAGCTGCCAACACTCGCCCTTCCAGTGGCAGTGTAAGTGTCAGCTGTCTGCTCGG AGGAGCTTCTGATAACACAGGATCTGGTATTGCCCGCCGTATAGTGTTGAAGAGTGGCCTTAACGTCATGCTTGCTTGTAATATCCCCAAGAACAGTCCT ATGATTGAGGCAAATGCGGAGAGGAAAATGATGGAGAAGCTCGTTCAGCTGGGATATACGCAGCCAAAGCTAGAACGATTTCGCTTCGTGATAGCTGAGA GAGCCGAGGAAGGAGTTGCTATGACTATGATCACAGCTCATAGATAA
AA sequence Show only first row Show all	>Lus10011844 pacid=23169234 polypeptide=Lus10011844 locus=Lus10011844.g ID=Lus10011844.BGIv1.0 annot-version=v1.0 MENSGGELGIHCFTEVVDEVTLHFQIIRLPKQIYAWIGCNSSKLGHLYAAANTRPSSGSVSVSCLLGGASDNTGSGIARRIVLKSGLNVMLACNIPKNSP MIEANAERKMMEKLVQLGYTQPKLERFRFVIAERAEEGVAMTMITAHR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48170			unknown protein		Lus10011844 [exp]	0	1
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10041743 [exp]	1.7	0.8643
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10041803 [exp]	2.4	0.8598
AT5G56520			unknown protein		Lus10005700 [exp]	3.9	0.8376
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Lus10041802 [exp]	4.2	0.8385
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10001813 [exp]	7.1	0.8220
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Lus10037554 [exp]	8.5	0.8047
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Lus10015009 [exp]	9.2	0.8321
AT5G26800			unknown protein		Lus10031426 [exp]	10.2	0.8376
					Lus10011965 [exp]	14.8	0.8214
AT5G45030			Trypsin family protein (.1.2)		Lus10031785 [exp]	19.9	0.7969

Compare expression of checked genes

Lus10011844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.