Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25050 241 / 4e-79 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT4G13090 239 / 2e-78 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT4G13080 233 / 7e-76 XTH1 xyloglucan endotransglucosylase/hydrolase 1 (.1) AT5G13870 207 / 7e-66 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT4G37800 204 / 1e-64 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT5G65730 202 / 7e-64 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT2G06850 197 / 7e-62 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT4G03210 192 / 7e-60 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) AT2G14620 191 / 2e-59 XTH10, XTR14 xyloglucan endotransglucosylase/hydrolase 10 (.1) AT1G11545 187 / 7e-58 XTH8 xyloglucan endotransglucosylase/hydrolase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022782 [exp] 544 / 0 AT3G25050 246 / 5e-81 xyloglucan endotransglucosylase/hydrolase 3 (.1) Lus10022784 [exp] 538 / 0 AT3G25050 239 / 1e-78 xyloglucan endotransglucosylase/hydrolase 3 (.1) Lus10025919 [exp] 285 / 4e-96 AT4G13090 318 / 4e-109 xyloglucan endotransglucosylase/hydrolase 2 (.1) Lus10038182 [exp] 285 / 5e-96 AT4G13090 319 / 2e-109 xyloglucan endotransglucosylase/hydrolase 2 (.1) Lus10011597 [exp] 209 / 3e-66 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10039643 [exp] 207 / 7e-66 AT5G65730 469 / 1e-168 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10032879 [exp] 206 / 3e-65 AT4G13090 248 / 2e-81 xyloglucan endotransglucosylase/hydrolase 2 (.1) Lus10003022 [exp] 198 / 5e-62 AT5G13870 506 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10011052 [exp] 197 / 2e-61 AT5G13870 507 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G244200 [exp] 256 / 7e-85 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1) Potri.001G071000 [exp] 206 / 4e-65 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.003G159700 [exp] 205 / 5e-65 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.014G140300 [exp] 202 / 9e-64 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.007G008500 [exp] 197 / 5e-62 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.009G083800 [exp] 191 / 3e-59 AT2G14620 454 / 1e-162 xyloglucan endotransglucosylase/hydrolase 10 (.1) Potri.019G125000 [exp] 189 / 1e-58 AT4G03210 450 / 3e-161 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.005G201250 [exp] 187 / 7e-58 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.018G084300 [exp] 186 / 1e-57 AT4G28850 403 / 1e-142 xyloglucan endotransglucosylase/hydrolase 26 (.1) Potri.002G060500 [exp] 186 / 1e-57 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10011845 pacid=23169248 polypeptide=Lus10011845 locus=Lus10011845.g ID=Lus10011845.BGIv1.0 annot-version=v1.0 ATGAAGAAACCAACTGTTCCTAATCATGCTCTTCTGATGATCATCCTTGTGGTACTGAACATTGCCGATCACGGGCAAACTCGATTCGAAGACGATTTCA TCGCCACGTGGGGATTCGATCACTTCCAGTTGCTTGACAATGGCACTGAAGTTCAGCTCACCCTCGATGGTGTCAAAGGGGGTGCTGGATTCGAGTCCAA ACGGAGTTATGGGTCGGGAGTCGTCCACGTGAAGATGAAGGTTCCTAAGAGGAATTCTTCTGGAGTTGTCACTGCTTTCTACCTAACTTCCGATGATCCG GGACAAGACGAGCTAGACTTTGAGATGCTCGGCTCACCGGACGACGGTAGTCCGTTCAATTTACAGACGAACATGTTTGTAAACGGCGTCGGAGGCAAAG AGCAACATGTTCTTCTCTGGTTCGACCCAACCGCCGATTTCCACGACTACACTATCCTCTGGAACCAACATCAGATCGTATTTTCCGTCGACGAGGTTCC GGTGAGAGTGATAAGGAAATCCGACGTCACGGACTACCCGTCGACGAAGGCGATGAAGGTGGTTGCCAGCCTGTGGAACGGAGAGTGGTGGGGAAAAGTC AACTGGAGCTACGCTCCGTTCGTGGCGAACTTCAAGGATTTCAGCCTCGCCGGATGTCCCGCCGTTGAGGGTTCCGATCTCGCGCCGTGCTTCTCTTCGC CGGAGGTTTACTGGTGGAATTCGGAGGAGTATTGGACGTTGGATCCTGTGCAAGAGAAGGCGTACGAGGATGTCACTTTGCAGTATATGGGATTTAACTA TTGTGACGTTATTAAGACTCCTCTGCCGCCGGAATGTGACCGGTGA
AA sequence Show only first row Show all	>Lus10011845 pacid=23169248 polypeptide=Lus10011845 locus=Lus10011845.g ID=Lus10011845.BGIv1.0 annot-version=v1.0 MKKPTVPNHALLMIILVVLNIADHGQTRFEDDFIATWGFDHFQLLDNGTEVQLTLDGVKGGAGFESKRSYGSGVVHVKMKVPKRNSSGVVTAFYLTSDDP GQDELDFEMLGSPDDGSPFNLQTNMFVNGVGGKEQHVLLWFDPTADFHDYTILWNQHQIVFSVDEVPVRVIRKSDVTDYPSTKAMKVVASLWNGEWWGKV NWSYAPFVANFKDFSLAGCPAVEGSDLAPCFSSPEVYWWNSEEYWTLDPVQEKAYEDVTLQYMGFNYCDVIKTPLPPECDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10011845 [exp]	0	1
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	2.2	1.0000
					Lus10010778 [exp]	2.8	1.0000
					Lus10011759 [exp]	4.0	1.0000
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	4.5	1.0000
					Lus10011496 [exp]	4.6	1.0000
AT1G26420			FAD-binding Berberine family p...		Lus10023368 [exp]	6.0	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10024923 [exp]	6.3	1.0000
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10027433 [exp]	7.1	1.0000
					Lus10013545 [exp]	7.4	1.0000
					Lus10033089 [exp]	7.5	1.0000

Compare expression of checked genes

Lus10011845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.