Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25040 364 / 5e-130 ERD2B endoplasmic reticulum retention defective 2B (.1) AT1G29330 308 / 1e-107 ATERD2, AERD2, ERD2 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1) AT4G38790 124 / 1e-34 ER lumen protein retaining receptor family protein (.1) AT1G19970 123 / 2e-34 ER lumen protein retaining receptor family protein (.1) AT2G21190 119 / 9e-33 ER lumen protein retaining receptor family protein (.1) AT1G75760 118 / 1e-32 ER lumen protein retaining receptor family protein (.1) AT3G25160 111 / 8e-30 ER lumen protein retaining receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022785 [exp] 417 / 7e-151 AT3G25040 382 / 9e-137 endoplasmic reticulum retention defective 2B (.1) Lus10043149 [exp] 322 / 6e-113 AT3G25040 332 / 2e-117 endoplasmic reticulum retention defective 2B (.1) Lus10029263 [exp] 249 / 2e-83 AT1G29330 337 / 7e-118 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1) Lus10007314 [exp] 145 / 6e-45 AT1G29330 179 / 2e-58 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1) Lus10007570 [exp] 122 / 4e-34 AT4G38790 466 / 2e-168 ER lumen protein retaining receptor family protein (.1) Lus10021097 [exp] 118 / 3e-32 AT1G75760 475 / 8e-172 ER lumen protein retaining receptor family protein (.1) Lus10026285 [exp] 116 / 9e-32 AT4G38790 473 / 7e-171 ER lumen protein retaining receptor family protein (.1) Lus10017213 [exp] 115 / 2e-31 AT1G75760 481 / 5e-174 ER lumen protein retaining receptor family protein (.1) Lus10003146 [exp] 112 / 5e-30 AT3G25160 388 / 2e-137 ER lumen protein retaining receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G056000 [exp] 376 / 1e-134 AT3G25040 383 / 3e-137 endoplasmic reticulum retention defective 2B (.1) Potri.001G315800 [exp] 364 / 5e-130 AT3G25040 355 / 3e-126 endoplasmic reticulum retention defective 2B (.1) Potri.011G071200 [exp] 284 / 4e-98 AT1G29330 341 / 1e-120 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1) Potri.009G128900 [exp] 123 / 2e-34 AT2G21190 476 / 2e-172 ER lumen protein retaining receptor family protein (.1) Potri.004G167400 [exp] 123 / 2e-34 AT4G38790 472 / 1e-170 ER lumen protein retaining receptor family protein (.1) Potri.002G022300 [exp] 120 / 2e-33 AT1G75760 464 / 2e-167 ER lumen protein retaining receptor family protein (.1) Potri.002G246700 [exp] 111 / 1e-29 AT3G25160 400 / 5e-142 ER lumen protein retaining receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF00810 [flax] [poplar] ER_lumen_recept ER lumen protein retaining receptor
Representative CDS sequence Show only first row Show all	>Lus10011846 pacid=23169184 polypeptide=Lus10011846 locus=Lus10011846.g ID=Lus10011846.BGIv1.0 annot-version=v1.0 ATGAATATATTCAGATTAGCAGGTGATATGACTCACCTGGCCAGCGTTCTCGTCTTGCTGCTCAAGATCCATACAATCAAGTCCTGTGCCGGTGTATCTT TAAAGACTCAGGAACTGTATGCACTTGTCTTTGTAGCTCGCTACTTGGACATATTTACCTCTTTTATATCCATCTACAATACCATCATGAAGTTAATATT CTTAGGAAGCACGTTTTCGATCATCTGGTACATGAAACACCACAAGCTTGTCAGAAGATCTTATGATAAAGATCAAGATACCTTCCGCCACTGGTTCCTT GTACTACCTTGTTTGCTCTTGGGCATTTTCATTCACGAGAAGTCGTCATTTTATGAGGTGATGTGGGCGTTTTCGATATTTCTGGAAGCTGTAGTCATAC TTCCTCAGCTTGTTCTGTTACAACGAACCAGAAATATTGACAATTTGACAGGCCAATATGTGTTTCTGCTGGGCGCTTACCGGGCACTATACATACTCAA CTGGATATATCGGTACTTCACAGAGCCGAACTATGTTCACTGGATAAGGATCGTTCAGACACTGGTTTACGCCGACTTCTTTTATTATTACTTCCAGAGT TGGAAAAACAACAAGAAGCTCCAGTTACCAGCTTGA
AA sequence Show only first row Show all	>Lus10011846 pacid=23169184 polypeptide=Lus10011846 locus=Lus10011846.g ID=Lus10011846.BGIv1.0 annot-version=v1.0 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGVSLKTQELYALVFVARYLDIFTSFISIYNTIMKLIFLGSTFSIIWYMKHHKLVRRSYDKDQDTFRHWFL VLPCLLLGIFIHEKSSFYEVMWAFSIFLEAVVILPQLVLLQRTRNIDNLTGQYVFLLGAYRALYILNWIYRYFTEPNYVHWIRIVQTLVYADFFYYYFQS WKNNKKLQLPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10011846 [exp]	0	1
AT1G64650			Major facilitator superfamily ...		Lus10033228 [exp]	1.0	0.9060
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10023286 [exp]	3.0	0.8574
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	4.7	0.8952
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	4.9	0.8841
AT2G26680			unknown protein		Lus10043275 [exp]	6.3	0.8741
AT1G31070		GlcNAc1pUT1	N-acetylglucosamine-1-phosphat...		Lus10038366 [exp]	9.2	0.8681
AT4G38040			Exostosin family protein (.1)		Lus10002664 [exp]	12.0	0.8606
AT2G26680			unknown protein		Lus10019418 [exp]	13.0	0.8451
AT1G08760			Plant protein of unknown funct...		Lus10026806 [exp]	13.3	0.8553
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10029902 [exp]	13.4	0.8685

Compare expression of checked genes

Lus10011846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.