Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07130 830 / 0 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT2G32770 560 / 0 PAP13, ATPAP13 purple acid phosphatase 13 (.1.2.3) AT4G13700 556 / 0 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G52810 306 / 7e-99 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52820 302 / 2e-97 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52780 293 / 4e-94 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G20500 286 / 4e-91 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT2G16430 244 / 1e-74 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT1G56360 237 / 4e-72 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT2G27190 232 / 5e-70 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022786 [exp] 1094 / 0 AT3G07130 828 / 0.0 purple acid phosphatase 15 (.1) Lus10016667 [exp] 832 / 0 AT3G07130 788 / 0.0 purple acid phosphatase 15 (.1) Lus10016665 [exp] 712 / 0 AT3G07130 672 / 0.0 purple acid phosphatase 15 (.1) Lus10028533 [exp] 678 / 0 AT4G13700 696 / 0.0 purple acid phosphatase 23 (.1) Lus10007119 [exp] 392 / 1e-133 AT3G07130 376 / 1e-127 purple acid phosphatase 15 (.1) Lus10017056 [exp] 295 / 2e-94 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10021376 [exp] 291 / 1e-93 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10040079 [exp] 292 / 3e-93 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10019625 [exp] 291 / 3e-93 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G243900 [exp] 884 / 0 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055900 [exp] 853 / 0 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055800 [exp] 743 / 0 AT3G07130 677 / 0.0 purple acid phosphatase 15 (.1) Potri.003G176000 [exp] 694 / 0 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.011G138200 [exp] 280 / 5e-89 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 278 / 6e-88 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.001G423700 [exp] 277 / 1e-87 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.004G160100 [exp] 242 / 1e-73 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.006G063700 [exp] 238 / 3e-72 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.009G121200 [exp] 238 / 4e-72 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10011847 pacid=23169268 polypeptide=Lus10011847 locus=Lus10011847.g ID=Lus10011847.BGIv1.0 annot-version=v1.0 ATGGCGTCTCCTCCTCCTCTGTTCTCTTTCGTCTTCTTCTGCCTCCTCTTCCCGCTCTACGTTTCCCCTTCCCACATCCCTTCCACCCTCGACGGCCCGT TCGACCCCGTCACCGTCTTCTTCGACATCAGCCTCCGCGGGAACGCCGTCGATTTGCCCGACACGGACCCCCGGGTCAAGCGTCGGGTCAATGGATTCAG ACCTGAGCAGATATCCGTCTCCCTCTCTTCCACTCATGACTCCGTCTGGATCTCCTGGGTCACAGGAGAGTTTCAAATTGGGTACGACATTAAGCCGTTG GACCCGGAATCCGTGGCCAGCGTGGTCCGATTCGGTATCCATAGATATCCATTGAGCCATGAAGCTATAGGGAGATCTCTGGTTTACAGCCAGCTTTACC CTTTCGAAGGCCTTCAGAATTACACTTCTGGAATCATCCACCATGTTCGCCTCACAGGGTTGAGACCGAGCACGAGGTATTACTACAGGTGTGGGGATCC ATCGATTGGGGAAATGAGCGATGTGCACAGTTTCAGGACAATGCCAGTTTCGGGACCGAAGAGCTATCCCACGAGAATAGCGATATTCGGGGATCTTGGT CTGACTTACAACTCGACTGCAACGATTAGTCATGTAGTGAACAACGATCCTGATCTTATGGTACTGGTTGGTGATGTGACTTACGCGAATCTGTACCTTA CGAATGGGACAGGGTCGGATTGTTATTCGTGTTCTTTCCCCGATACTCCTATCCATGAGACTTACCAACCTCGCTGGGATTACTGGGGGAGGTTTATGCA GGATGTGATTTCGAAAGTTCCGATCATGGTGGTGGAAGGGAACCATGAGATAGAGCCACAGGTTGATGGAAAGACGTTTGTTTCGTACAGTTCGAGGTTC GCGTTCCCTTCTGAAGAGAGTGGATCGCATTCGACATTCTACTATTCGTTCAATGCCGGTGGAATCCATTTCATCATGCTTGGAGCCTACATTTCATACG ATCAGTCATCTGAACAGTACAGGTGGCTTGAGCAAGATCTGGCGAATGTGGACAGATCAGTCACTCCATGGCTTGTAGCTGTGTGGCATCCACCTTGGTA CAATTCATACAATGCTCATTACAGAGAGGTAGAGTGCATGAGGGTGGAGATGGAGCAGCTGATCTACTCGTATGGTGTCGACATTGTCTTCAATGGACAT GTTCATGCCTATGAGAGGTCAAACAGAGTCTATAACTACACACTGGACCCATGCGGGCCTGTGTATATCACAATCGGTGACGGTGGGAACAGAGAAAAGA TGGCTGTGGAGCATGCTGACCAACCCGGTCAGTGTCCAGAACCATCAACCACGCCCGATGAGTACATGGGCGGCTTCTGTGCAGCAAACTTCACTTCGGG TCCAGCAGCCGGTCAGTTCTGCTGGGATCGACAACCCGATTTCAGTGCCTTCAGGGAAAGTAGCTTCGGCCATGGGATCCTCGAGGTGAAGAACGAGACG TGGGCGCTGTGGAAATGGCACAGGAACCAGGACGAAGTGAGCGAAGTGGGAGACCAGATTTACATAGTGAGGCAGCCTGATAGATGTCCTGTTGCTGGCA GTGCTCATCTGGTTTCAGACATTTGA
AA sequence Show only first row Show all	>Lus10011847 pacid=23169268 polypeptide=Lus10011847 locus=Lus10011847.g ID=Lus10011847.BGIv1.0 annot-version=v1.0 MASPPPLFSFVFFCLLFPLYVSPSHIPSTLDGPFDPVTVFFDISLRGNAVDLPDTDPRVKRRVNGFRPEQISVSLSSTHDSVWISWVTGEFQIGYDIKPL DPESVASVVRFGIHRYPLSHEAIGRSLVYSQLYPFEGLQNYTSGIIHHVRLTGLRPSTRYYYRCGDPSIGEMSDVHSFRTMPVSGPKSYPTRIAIFGDLG LTYNSTATISHVVNNDPDLMVLVGDVTYANLYLTNGTGSDCYSCSFPDTPIHETYQPRWDYWGRFMQDVISKVPIMVVEGNHEIEPQVDGKTFVSYSSRF AFPSEESGSHSTFYYSFNAGGIHFIMLGAYISYDQSSEQYRWLEQDLANVDRSVTPWLVAVWHPPWYNSYNAHYREVECMRVEMEQLIYSYGVDIVFNGH VHAYERSNRVYNYTLDPCGPVYITIGDGGNREKMAVEHADQPGQCPEPSTTPDEYMGGFCAANFTSGPAAGQFCWDRQPDFSAFRESSFGHGILEVKNET WALWKWHRNQDEVSEVGDQIYIVRQPDRCPVAGSAHLVSDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10011847 [exp]	0	1
AT5G03510	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023912 [exp]	1.0	0.8295
AT1G16560			Per1-like family protein (.1.2...		Lus10027411 [exp]	8.7	0.7365
AT3G04470			Ankyrin repeat family protein ...		Lus10032775 [exp]	8.7	0.7744
AT1G18210			Calcium-binding EF-hand family...		Lus10042008 [exp]	8.8	0.7540
AT3G23090			TPX2 (targeting protein for Xk...		Lus10021223 [exp]	10.8	0.7830
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10038882 [exp]	14.2	0.7822
AT2G39780		RNS2	ribonuclease 2 (.1.2)		Lus10041084 [exp]	17.5	0.7223
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10023792 [exp]	17.9	0.7680
					Lus10019700 [exp]	20.6	0.7690
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10029353 [exp]	23.3	0.7775

Compare expression of checked genes

Lus10011847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.