Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48730 660 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53170 393 / 4e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06430 330 / 5e-108 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74850 179 / 2e-48 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT4G39620 166 / 2e-45 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G39980 152 / 1e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G35130 150 / 5e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G02860 150 / 2e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G42310 145 / 7e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G31400 144 / 2e-36 GUN1 genomes uncoupled 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022787 [exp] 941 / 0 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024893 [exp] 394 / 2e-132 AT3G53170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000862 [exp] 331 / 6e-108 AT3G06430 644 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028683 [exp] 313 / 3e-101 AT3G06430 640 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027552 [exp] 290 / 1e-92 AT3G06430 501 / 1e-175 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039311 [exp] 223 / 2e-69 AT3G06430 358 / 5e-123 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033127 [exp] 159 / 2e-41 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10035850 [exp] 152 / 2e-40 AT4G39620 579 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10015530 [exp] 155 / 4e-40 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G243600 [exp] 725 / 0 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G058300 [exp] 410 / 4e-139 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G153900 [exp] 335 / 9e-110 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G098700 [exp] 325 / 6e-106 AT3G06430 692 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 172 / 8e-46 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.005G082400 [exp] 153 / 1e-40 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G166200 [exp] 156 / 2e-40 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G250200 [exp] 152 / 2e-39 AT5G42310 974 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G036400 [exp] 153 / 3e-39 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 152 / 3e-39 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10011849 pacid=23169210 polypeptide=Lus10011849 locus=Lus10011849.g ID=Lus10011849.BGIv1.0 annot-version=v1.0 ATGGCGGCAACTCCACTGTCCGCCACCCCAAACCCAATCCCACGCCCTCAACAAAACCAACCAAACCTAGCAGTTTCAGAACGCATCATCGCAATCCCCA TCCCCAACAAACGCAGACCAGAACAGCCACTACTCTCTTCTTCACGCTCCGCCAATGGCGAGTCTACAGCATCTGCATCAACGCTCCGGAGAAGTCAGCA GAGAGCAGCGGAGGAGCTGGAGAAGGCGAAGAAGAGAGAAGCCAAGGAGAGGAAAGAAGAGAAGAACAGGAAGACCGGGTCCCGCAAGGCGATCTCAGTG ATTCTGCGACGGGAGGCCACTAAAGCCATCATCGAGAAGAAGGTTGGAGGGACAATCAATTCCAAGAGATTGCTTCCGCGGACTGTGTTGGAAGCTCTGC ATGAACGGATTACTGGACTTCGCTGGGAATCTGCGCTTAAGGTCTTTGAGCTGCTCAGGGAGCAACTATGGTACAAGCCGTTTCCAGGAGTCTACGTAAA GATGATTTCGATGTTAGGCAAGTGCAAACAGGCCGAGAAAGCTCAGCAGCTATATCAGGTGATGGTTGGTGAAGGATGTGCTCCATGTCTGGAATCCTAC ACAGCTCTTGTGTCGGCATATGGCAGGAGCGGTCTGTTCGATCAGGCGTTTTCCCTGCTGGAGGAAATGAAGACGACTCCCGACTGTTATCCCGATGTTC ATACTTACTCGATCCTCATCAAGTCGTGCCTGCAAGTATATGAATTTGAGAAAGTTCAGGCTCTGCTCTCTGACATGGCTGCTTCTGGGATCAGACCTAA TGTTGTCACTTACAACACCCTCATCGACTCCTATGGCAAGGCCAAAATGTTTGAGGAGATGGAAGCAACACTAGTGAAGATGCTCGGCCAAAAGAACTGC GATCCCGACGTACGGACAATGAACTCAGCAATGAGAGCATTTGGCGGCAACGGACAGATCGAAATGATGGAGAAATGCTACGACAAGTTCCAAACCTCCG GCATCGAGCCAAACATCAAGACCTTCAACATCCTCCTCGACTCGTATGGAAAATCAGGCGAGTTCCAGAAAATGAGCGCAGTAATGGAGTACATGCAAAA ATACCACTACTCATGGACGATCGTAACATACAACGTGGTGATCGATGCGTTCGGCCGAGCAGGAGACCTCAAGCAGATGGAGTACATGTTCCGGCTGATG CGGACCGAGGGGATCAAGCCGAGCTGCGTGACACTCTGCTCCTTAGTTCGAGCCTATGGCCAAGCTGGGAAGCCCGAGAAGATCAGTGGAGTGCTGAGGT TGGTGGAGAACTCGGACGTGATGCTGGATACTGTGTTCTTCAACTGCTTGGTGGATGTTTATGGTAAACTGGAGTGCTTTGTTGAGATGAAGGAAGTTCT TGAGTGGATGGAGGAAAGAGGATGTAAGGCTGATGTTGTTACTTACAGAACTATGATCAAGGCTTATAGGGATAAAGGGATGAGCAGCCATGTGAAGAAG ATTCAGGAGCTTCTTAGATCTGTTGAAGTGAGTCGTATCCCTAAGAAGAGGCCTGATTTTTGA
AA sequence Show only first row Show all	>Lus10011849 pacid=23169210 polypeptide=Lus10011849 locus=Lus10011849.g ID=Lus10011849.BGIv1.0 annot-version=v1.0 MAATPLSATPNPIPRPQQNQPNLAVSERIIAIPIPNKRRPEQPLLSSSRSANGESTASASTLRRSQQRAAEELEKAKKREAKERKEEKNRKTGSRKAISV ILRREATKAIIEKKVGGTINSKRLLPRTVLEALHERITGLRWESALKVFELLREQLWYKPFPGVYVKMISMLGKCKQAEKAQQLYQVMVGEGCAPCLESY TALVSAYGRSGLFDQAFSLLEEMKTTPDCYPDVHTYSILIKSCLQVYEFEKVQALLSDMAASGIRPNVVTYNTLIDSYGKAKMFEEMEATLVKMLGQKNC DPDVRTMNSAMRAFGGNGQIEMMEKCYDKFQTSGIEPNIKTFNILLDSYGKSGEFQKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYMFRLM RTEGIKPSCVTLCSLVRAYGQAGKPEKISGVLRLVENSDVMLDTVFFNCLVDVYGKLECFVEMKEVLEWMEERGCKADVVTYRTMIKAYRDKGMSSHVKK IQELLRSVEVSRIPKKRPDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48730			Pentatricopeptide repeat (PPR)...		Lus10011849 [exp]	0	1
AT2G44870			unknown protein		Lus10020395 [exp]	2.4	0.8177
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10042112 [exp]	3.5	0.8149
AT1G22850			SNARE associated Golgi protein...		Lus10006162 [exp]	10.2	0.8333
AT2G22360			DNAJ heat shock family protein...		Lus10000631 [exp]	14.1	0.7838
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10036613 [exp]	24.9	0.8053
AT2G33255			Haloacid dehalogenase-like hyd...		Lus10004405 [exp]	28.5	0.7760
AT5G48730			Pentatricopeptide repeat (PPR)...		Lus10022787 [exp]	31.3	0.7900
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10033504 [exp]	32.1	0.7386
AT2G44870			unknown protein		Lus10009575 [exp]	34.9	0.7807
AT2G44310			Calcium-binding EF-hand family...		Lus10008649 [exp]	35.2	0.7849

Compare expression of checked genes

Lus10011849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.