Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24870 1045 / 0 Helicase/SANT-associated, DNA binding protein (.1.2) AT3G24880 1034 / 0 Helicase/SANT-associated, DNA binding protein (.1) AT3G12810 61 / 1e-08 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022788 [exp] 2944 / 0 AT3G24870 1202 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2) Lus10007174 [exp] 64 / 6e-10 AT3G12810 281 / 2e-85 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10002974 [exp] 63 / 3e-09 AT3G12810 1071 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10038177 [exp] 49 / 4e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G189900 [exp] 1305 / 0 AT3G24870 1237 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2) Potri.002G243400 [exp] 1163 / 0 AT3G24870 1017 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2) Potri.002G243350 [exp] 105 / 1e-22 AT3G24870 184 / 6e-48 Helicase/SANT-associated, DNA binding protein (.1.2) Potri.001G207700 [exp] 66 / 5e-10 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.003G022100 [exp] 57 / 1e-07 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07529 [flax] [poplar] HSA HSA
Representative CDS sequence Show only first row Show all	>Lus10011850 pacid=23169220 polypeptide=Lus10011850 locus=Lus10011850.g ID=Lus10011850.BGIv1.0 annot-version=v1.0 ATGCATGTCTGTGATTCGAGGTCTGATGTCTTGATAAATGCTGAGGTTGACTCCATGGGAGGGGTTGTTGACGGCGGAGTTGGTAATGGAATCAAATCCT CTCCGCGTAGAGCGGCAATAGAAAAGGCTCAGACAGAGCTTAGACAAGAGTATGATGTTCGCGAGGAAAGGAGAAGGGAACTTGAGTTTCTTGAGAAAGG TGGAAATCCTTTGGACTTTAAATTTGGCAGCACTGCTTCAATTAGTGTCCAGTCCACCTCACTCACTGATCAGCAGGTGGAACATGTTGTGACTAGCAAA GCTAAGGGTAGTTTTGCTTTGACTGCATCAACCCATGGGGATTCTGTTGAGAGTAGTGGTCAACCCGGGCCTACTACAGTTTGCGAACCTAACAGTGCTG ATAATTTTGATGGTCAAACAAGTTTACTTCGAGGTGAAAGAAATCGTAGATATGTCAGCAGAAGAAACAGTGTAGGTCCATCTCAGCAGTCTTCTCGAAT GGAAGGTACTCAAAATGCAAAGGAATCTGAAGATTCTGCTATAGTTCGTCCATATGCTCGAAGGAATAGGTCCCGGCCAAACCGAGATGGTGCTAAGTCA ACTTCAGGTGATGTAGTTAAGAGACCCGGTGGTCATGGATCTTCTTTACCCATTCGTGGGGGTTCTAGGAATTTGAAGTTGATGTCCGAGTCAAACAGTC AGAAAGACAATACATTTGCTACTGCTGGTAAGCCAAAACCTGCACTTTCAAATGGGGAAATGCTCCCTCATACAGTGGAAGTGAAGGCTCTGCAACCAAC AGATGCAGCTAAAAGCAGTCATGATGTTAGAGAGTCCAAGTCCAACGTTTTGAAAGACAAGGAAAAAGGACAACCTGCAGACGCTGACAGTCAGAAATCA CAAACTAATGACATTGTCAGGCATACTGGGAATGGAGTTAAGGAGCAAGTAGTTTCAGCTGGCCCTGAGTCTTCACCTTGTGCAGCTGCTGGGAGATCAG AGGTTGAAGTTGGTTCTGCTCAGTTGAATAACGCTAGTAACCAGAAAGCCAGTGATAATGTTGGTCAAAATGGCGGTACCACTAACGTGGCAAAGAGATT GGATTCAGATTCCTCTTGTACCCCAAATAGCCTTAGCTTAGATGTAAATAAAGGAGGCAATTTGTCTATTAGTTGTAGGGAGGATGATTCTATCAGAGTT ACTTTAACGCAGGCAGCAGAATTTGAAGGAACAAAAATCTCCTGTGCAGCTGAAACTAGGAAGGATAGGAATGATACTACTGCGGTTGAGAATAATGCTT CTGATGCTGCAGGTGTCAACGCTGCTTCTATAAATGTTTTTGTTAATGGCATGGCAGTCAAGGTAGTAGAAGATACAAAAAAGCCTTCTGATCCTCAGAT TGAGGCTAACACCTCAAATCTTGGAGAAACATATCAAAATGAGATTGCTGCATGTGTGAGTGATGAGAAAGTTATCAACACACTAGACAATGAGTTGATA TCCAACAGAGAACCCACTGGCCCTTGTGGAACTGTGAAATCTGCAGATCTTTCCTTGCAAGAGGAGCTTCCAAAAATTCATTTTCCAGAGAAAAACGCTA CTTCTGCCGCTGAATCTCAATCTTGTCCTGACAGAGACATTAAGATAGTCAGGGCTCGTGAAGATTCTATATTGGAGGAGGCCCGGAGTATAGAGGCCAA GCGGAAGAGGATTGCCGAATTATCTTTCCGAACAGCTAAGGTGGAACCATGCAACAAGTCTCACTGGGATTTTGTCCTTGAAGAAATGACATGGTTGGCA AATGATTTTGCGCAGGAGCGCCTTTGGAAAATGACTGCTGCTGCACAAATATGTCGCCGTGCTGCAAATAGTTATCGGCTGAGAGTTGATGAACAAATTC AATGTGGGAAGCTGAAACAAGTGTCATACACGATCGCAAAAGCTGTGATGCAGTTCTGGCAACTGGCAGAAGCAAAGCTTCATTCAGACAGAAGTCTTGG TCCAGAAACAGACTTTGATGAGAACAAACCTGCTAATGGCAAGGACGTGTGCAAAGACTTTGAGCAACAAAGTCCCAGAAAGAATGGTATTCAGGGATAT GCAGTGAGATTTCTGAAACTTAATACTTCTCCAGTTCCTGTACTTCAAGCAGAACAGCCGGCAACTCCAGACCTGATAGGCGACACTGGAGTTAAGGAAG TTTCATGGGATGATCATTTGACTGAAGAGAGCTTGTTTTACGCAGTCCCTTCTGGTGCAATTGACTCCTATAGAAGATCAATTGAATCACACTTGGTTCA GTTTGAGAAAACCGGCAGTAGCTTGCAAGACGAGGATGATACATCCATGGTTGGTGCTGGTGGAGACTTTGGTTATGCTGAAAATGGATACGAGGAGGAT GAAGGTGAAACTAGTACATACTATTTGCATGGAGCATTTGAAAGTAGCAAGCGGAAAAAACATGAGCAAAAGAAAAGGAAACACTTCATGAAGTCATTCC CAACAAGGTCATATGAGGTGGGAGCTGATATGCTATATGGAACGGTTGGGCCTTCACCAAATACCTTCTTTGGAAAACGTCCTGCCAGTAATCTTGGTCC AATTCCACCAAAACGCATGCGCACTGCTTCAAGGCAGAGAGTTATTGGTCCTTTCAGCACAGGAGGTACTGCAGGTCCATCTGCTCCGGCAAAGACTGGT GCTTCAAGTGGAGACACGAGTTCGTTTCAGGATGATCAAAGCATGTATGGTGGGTCTCAAATCCAGAAAGGCATGGAGGTTGATTCTGTTGCCGAGTTTG AAAAGCGTCTCTCTTATGGTTGCTCAGATATGACAAAGCCAAAAAAGAAGAAGAAGGCCAGGCCCCTGGGTTCTGCTTATGAACAGGGTTGGCAGCTCGA TTCAACCACACTTGTTGAACAGAGAGAGGACTCTAGAAAGAGGCCAGAGAATCATCATTTTGACTCTAACGGGACTAGTGGTGCATATGGGCAACACACT TGGAAAAAGCCAAAGTTGATGAAGCAATCGGCAGATGCTTTTGACAATGTAGCTCCATCGACTGGACATATTCCTTCTGTATCAGCTTCTCATAGTAATA TGCCCAGCACAAATCGATTTATGAGATTGATTAATGGCAGGGACAAGGGAAGGAAAGCCAAGTCACTGAAGCAGACGTCTGCAGGGCAGGTTGGAATTGG AGGTTCATGGACGCTCTTTGAGGATCAGGCACTTGTTGTCCTTGTACATGACATGGGTCCAAACTGGGAGCTTGTGAGTGATGCTATCAATAGCACCCTC CATTTTAAGTGTATATTTCGTGCACCTAAAGAGTGCAAGGAACGACATAAAATTTTGATGGACAAGGGTGATGGAGATGGAGCTGACAGTGCTGAAGATT CAGGGACTTCTCAATCATATCCGTCAACTTTGCCTGGCATCCCAAAGGCACGATCACTTACCTTTCAAATACTTTGTGCCAGACAATTGTTTCAGCGGTT GCAAGGGCCTATGGAAGAGGAAGCTATCAAGTCTCATTTTGAAAAGATTATTATGATTGGCAAGAAACTCCATTATAGGAGGAGTCAGCATGATAATCAG GATCCTAAGCACATACCAGTTCACAATTCTCATGTCATTGCTCTCTCCCAAGCTTTCCCAAATAACCTGAATGGAGGGGTCCTGACGCCTATTGAGTTGA TTGATCTGAATCCTTCAAATCCAGATGCCCACATTCTTGGGTATCAAGGTTCTCATACTAGTGGGTTGCCCATGCCAAGTCAAGGTGTTGTAGGATCAAT ACTTCCTGGTTCTGGTGCAAATCCTTCTCCACAAGGATCCTCTGGCATGGCTCTGGGTAATAATTCATCATCGCCATCTGGTCCGCTCCCTCCTTCTGCA AGGGATGGAAGATTCAATTCTCCAAGAACATCTTTGCGTGCTAATGAACACCCGAGAATGCAACATTATAACCAAATGCCGGGGCGAAACATGCAGCAGC AGCAGCCAAACCAGTCTGTTTCTGGGCCTCTACCTGGTGGGAATAGTATGGGCATGATGCATGGGATGAATAGAGGCATGCCATTGCCAAGGCCTGGTAT CCAGGGAATGACATCGCCAGTGCCAAATTCAAGCAATATGCTTTCTCCTGGTGTGGCTGGGATACCCGGCGGAGTTAATATGCAACCCAGAACTGTGCCA GGTCAACCAAACTCGTTGATGAGACCACGTGAGCAACATATGATGCGGCCATACTCAGGCCATCCGCATCAAATATCTCCTCAACCGTCCCACCCGCTCA GCAATCCTAGAGTCCCGGGACCTAATCAGGCAACGACAGCTCAGCAAGCGTATGCAATCCGCATGGCTAAAGAAAGACAGATGCAGCAGCGATATCTTCA ACAACAGGAGCAGTTAGCTGCATCTGGGGCCCACATGGCGCCACATGTCCAACCTCAATCGCAACCGCAACTTCCTTCGTCATCATTGCCAATGCAAACT TCATCACCGTCGGTACCATTACCCGCAATGACGCAGCAGACATCATCACCGATGTCTGTGCAGCAGCAGAAAGCTAACGTGGCCCATCATGGACCAATCA GAACCCCTCAGGGTGGGACCAGTGGGTTGGCTAATCAGATGGTAAAGCAACGGCAACGGTTATACCAGCAACCTGGCAGGAATCATACCCAGCAACGGCC ACAATTGTCGCAACAAAAGCTTGTAAAAGGAGCTGGTAGAGGGAACATGAACGGGATTTCGATACCCGTGGGGAACAACAAGGTGGAGGAGAAAGGTCAA GGCTTTCATTCTGGTTCTCCGTCACAACCGGCATCAAAACCGGTGGTTACTCCTCAATCCTCGAACCATTTACAGCCTCAGCAAAAGCAAATTCCTGCCT CATCACAGCATCCATCGAAACAGCTCCCGCTGTCGCCAGCTGGCAATGCCCCACCAGGTTCTCATCAAGCTGCTACTTCAGCTATGCCTGCACCAAACCA GAAGCAGGTAAATCAAGCTCATGGAACAGTTCAGAGAATGCTTAAACAGAATAATCAGAAGAATTCGGGCTGCTTGCCGATCAAGACACAAACTGATCAA CGTCAGTATGAACAACGGCCTCTTAACAATGTTTCACCGATGGGTATCGGTACAGCTCCAGCTGCACCTACAGGCAGTAATGATACAGCCACTGTGGTTC CACCACCAAGTAAAGTCTCTGATCCTCCTAATGATTCAGCTAAACTGAATCCCGCCTCCCAAGTTGGTTCTGTAGGAGGCAGCCCGCCTCTTCAAACGCC ATCGGGGACCGAACCTGTGGCCTCTGCCAGCCATGGTTTAGGCCAAAGGCAGCTGTCTGGAGGTTTGTCGCAACCGGGACAGAATGCTTTAGCTAAGCGG CAGCAGCAGCAACCTGAACTCCAGTCAGCACCATCACCGCAACAAGAACAACCACCGCAACGAGAACACCACCCTCCACCGCCATCAGTGCAGCAGCCGT CCGAGCAACAAACACATCATCAGACAGCGGAAGGCGGGGGTTTGTATAGTAAGCCGACATCCGAAACTAATCTGGAGTGA
AA sequence Show only first row Show all	>Lus10011850 pacid=23169220 polypeptide=Lus10011850 locus=Lus10011850.g ID=Lus10011850.BGIv1.0 annot-version=v1.0 MHVCDSRSDVLINAEVDSMGGVVDGGVGNGIKSSPRRAAIEKAQTELRQEYDVREERRRELEFLEKGGNPLDFKFGSTASISVQSTSLTDQQVEHVVTSK AKGSFALTASTHGDSVESSGQPGPTTVCEPNSADNFDGQTSLLRGERNRRYVSRRNSVGPSQQSSRMEGTQNAKESEDSAIVRPYARRNRSRPNRDGAKS TSGDVVKRPGGHGSSLPIRGGSRNLKLMSESNSQKDNTFATAGKPKPALSNGEMLPHTVEVKALQPTDAAKSSHDVRESKSNVLKDKEKGQPADADSQKS QTNDIVRHTGNGVKEQVVSAGPESSPCAAAGRSEVEVGSAQLNNASNQKASDNVGQNGGTTNVAKRLDSDSSCTPNSLSLDVNKGGNLSISCREDDSIRV TLTQAAEFEGTKISCAAETRKDRNDTTAVENNASDAAGVNAASINVFVNGMAVKVVEDTKKPSDPQIEANTSNLGETYQNEIAACVSDEKVINTLDNELI SNREPTGPCGTVKSADLSLQEELPKIHFPEKNATSAAESQSCPDRDIKIVRAREDSILEEARSIEAKRKRIAELSFRTAKVEPCNKSHWDFVLEEMTWLA NDFAQERLWKMTAAAQICRRAANSYRLRVDEQIQCGKLKQVSYTIAKAVMQFWQLAEAKLHSDRSLGPETDFDENKPANGKDVCKDFEQQSPRKNGIQGY AVRFLKLNTSPVPVLQAEQPATPDLIGDTGVKEVSWDDHLTEESLFYAVPSGAIDSYRRSIESHLVQFEKTGSSLQDEDDTSMVGAGGDFGYAENGYEED EGETSTYYLHGAFESSKRKKHEQKKRKHFMKSFPTRSYEVGADMLYGTVGPSPNTFFGKRPASNLGPIPPKRMRTASRQRVIGPFSTGGTAGPSAPAKTG ASSGDTSSFQDDQSMYGGSQIQKGMEVDSVAEFEKRLSYGCSDMTKPKKKKKARPLGSAYEQGWQLDSTTLVEQREDSRKRPENHHFDSNGTSGAYGQHT WKKPKLMKQSADAFDNVAPSTGHIPSVSASHSNMPSTNRFMRLINGRDKGRKAKSLKQTSAGQVGIGGSWTLFEDQALVVLVHDMGPNWELVSDAINSTL HFKCIFRAPKECKERHKILMDKGDGDGADSAEDSGTSQSYPSTLPGIPKARSLTFQILCARQLFQRLQGPMEEEAIKSHFEKIIMIGKKLHYRRSQHDNQ DPKHIPVHNSHVIALSQAFPNNLNGGVLTPIELIDLNPSNPDAHILGYQGSHTSGLPMPSQGVVGSILPGSGANPSPQGSSGMALGNNSSSPSGPLPPSA RDGRFNSPRTSLRANEHPRMQHYNQMPGRNMQQQQPNQSVSGPLPGGNSMGMMHGMNRGMPLPRPGIQGMTSPVPNSSNMLSPGVAGIPGGVNMQPRTVP GQPNSLMRPREQHMMRPYSGHPHQISPQPSHPLSNPRVPGPNQATTAQQAYAIRMAKERQMQQRYLQQQEQLAASGAHMAPHVQPQSQPQLPSSSLPMQT SSPSVPLPAMTQQTSSPMSVQQQKANVAHHGPIRTPQGGTSGLANQMVKQRQRLYQQPGRNHTQQRPQLSQQKLVKGAGRGNMNGISIPVGNNKVEEKGQ GFHSGSPSQPASKPVVTPQSSNHLQPQQKQIPASSQHPSKQLPLSPAGNAPPGSHQAATSAMPAPNQKQVNQAHGTVQRMLKQNNQKNSGCLPIKTQTDQ RQYEQRPLNNVSPMGIGTAPAAPTGSNDTATVVPPPSKVSDPPNDSAKLNPASQVGSVGGSPPLQTPSGTEPVASASHGLGQRQLSGGLSQPGQNALAKR QQQQPELQSAPSPQQEQPPQREHHPPPPSVQQPSEQQTHHQTAEGGGLYSKPTSETNLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10011850 [exp]	0	1
AT5G07940			unknown protein		Lus10021162 [exp]	2.2	0.9348
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	4.9	0.9238
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10019489 [exp]	5.2	0.9017
AT3G13225			WW domain-containing protein (...		Lus10010578 [exp]	5.5	0.9195
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10037246 [exp]	8.1	0.9158
AT1G24300			GYF domain-containing protein ...		Lus10032021 [exp]	8.4	0.9095
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10035661 [exp]	11.0	0.9211
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10012626 [exp]	14.0	0.8614
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10010197 [exp]	15.7	0.8709
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10022788 [exp]	16.5	0.9202

Compare expression of checked genes

Lus10011850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.