Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24860 108 / 1e-27 Trihelix Homeodomain-like superfamily protein (.1) AT2G44730 88 / 1e-19 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G58630 70 / 1e-13 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G54390 62 / 4e-11 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10030 57 / 6e-09 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G24490 45 / 4e-05 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT5G05550 41 / 0.0004 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G11100 40 / 0.0006 Trihelix sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022789 [exp] 379 / 2e-133 AT3G24860 141 / 7e-40 Homeodomain-like superfamily protein (.1) Lus10000963 [exp] 96 / 3e-22 AT2G44730 124 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10040141 [exp] 94 / 9e-22 AT2G44730 123 / 1e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10011020 [exp] 79 / 1e-16 AT2G44730 123 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10013350 [exp] 64 / 3e-13 AT3G24860 70 / 1e-15 Homeodomain-like superfamily protein (.1) Lus10024143 [exp] 59 / 2e-09 AT3G54390 172 / 2e-50 sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 54 / 7e-09 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 54 / 5e-08 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 53 / 5e-08 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G243300 [exp] 137 / 1e-38 AT3G24860 167 / 8e-50 Homeodomain-like superfamily protein (.1) Potri.002G139500 [exp] 94 / 6e-22 AT2G44730 252 / 3e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.014G051200 [exp] 94 / 8e-22 AT2G44730 239 / 3e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.003G083800 [exp] 86 / 9e-19 AT2G44730 123 / 6e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.001G150600 [exp] 83 / 7e-18 AT2G44730 114 / 6e-28 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.003G195300 [exp] 63 / 5e-11 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1) Potri.001G028400 [exp] 62 / 6e-11 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1) Potri.010G233500 [exp] 57 / 6e-09 AT3G10030 434 / 3e-148 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.008G027000 [exp] 56 / 1e-08 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.001G113600 [exp] 52 / 2e-07 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011851 pacid=23169212 polypeptide=Lus10011851 locus=Lus10011851.g ID=Lus10011851.BGIv1.0 annot-version=v1.0 ATGTCCTCCCCCTCCTCTCCACCGCCGCTGCCACCACCGTCCACCGCCACCGCGGTGAAGAAGCCTCAGCCAATCACATGGAGCCAGGAGGAAACCATCC AGCTTATCCTAATCTACCAGCAAAAATGGCACGCTAACAACCGCCGCCACCTCAGAGCCCCGCAATGGGAAGAGATCTCCACCGCCGTCGCCGACCGCTG CGGCGGCCACAACGACGCTGACCCCCTCACCTCCGTCTCCCCCGAGCCCGCCAAATCGGGAATCCAGTGCCGCCACAAGATGGAGAAGCTCCGCCGCCGC TACCGCTCCGAGCTCCCGCGCGCCTCTTCCTCTAATTGGCCCTTTTTCTCCCTCATGGATTCAATGGAGCGCGGCCCCATCTCCGCCCGCCCCCTGTCGG AGTATCACGGGGAACCAGTTGAAGAAGAAGATGAAGAAGAAGACGAAGCAGAAGAAGATTACCAATCAGTCTATAACAACAAATCGAGGAGCATTAATCA TATACTGAGAAAACCCAGCGTTGTGAACAGGTTTCCAGGTAACAATTACTCAGGCTTTCTTCTTCAGGCCGCCGCTGCGGCGGCGGAAGGCGGCGGAAAG CGGAAGAGAGTTGAAGATGAAGGAATCAGAGCGGAGGAAGGAGAGGGAATTGGGGGGTTGTTGGTTGTTGATGAGGTGAAGAAGCTGATAGAGAAGATGA AAGGAGTGGAGAGGAAGAAGATGGAGATGGTGAAGGAAACAGAGAGGTGGAGGATGGAGATGGAGAAGCAGAGGATGGAGATGATGCTGGCTTCTCAGAG GAAGATTCTTCAGCTGATTGCTTCTTCTTCAGCTTCTGATGATGATGGTGATGATGATAGTTAG
AA sequence Show only first row Show all	>Lus10011851 pacid=23169212 polypeptide=Lus10011851 locus=Lus10011851.g ID=Lus10011851.BGIv1.0 annot-version=v1.0 MSSPSSPPPLPPPSTATAVKKPQPITWSQEETIQLILIYQQKWHANNRRHLRAPQWEEISTAVADRCGGHNDADPLTSVSPEPAKSGIQCRHKMEKLRRR YRSELPRASSSNWPFFSLMDSMERGPISARPLSEYHGEPVEEEDEEEDEAEEDYQSVYNNKSRSINHILRKPSVVNRFPGNNYSGFLLQAAAAAAEGGGK RKRVEDEGIRAEEGEGIGGLLVVDEVKKLIEKMKGVERKKMEMVKETERWRMEMEKQRMEMMLASQRKILQLIASSSASDDDGDDDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10011851 [exp]	0	1
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10015772 [exp]	6.2	0.8375
AT4G22560			unknown protein		Lus10028927 [exp]	9.1	0.8824
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10025406 [exp]	11.2	0.8577
AT4G23610			Late embryogenesis abundant (L...		Lus10027179 [exp]	14.1	0.8786
AT5G53420			CCT motif family protein (.1.2...		Lus10019027 [exp]	14.7	0.8758
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026673 [exp]	16.9	0.8646
AT4G23610			Late embryogenesis abundant (L...		Lus10039662 [exp]	21.1	0.8709
AT2G01610			Plant invertase/pectin methyle...		Lus10038645 [exp]	21.3	0.8687
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10023687 [exp]	21.5	0.8555
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10031530 [exp]	24.4	0.8532

Compare expression of checked genes

Lus10011851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.