Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26830 96 / 5e-24 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 91 / 3e-22 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 82 / 4e-19 O-Glycosyl hydrolases family 17 protein (.1) AT5G20560 77 / 1e-17 Glycosyl hydrolase superfamily protein (.1) AT4G14080 76 / 7e-17 MEE48 maternal effect embryo arrest 48, O-Glycosyl hydrolases family 17 protein (.1) AT5G58480 73 / 8e-16 O-Glycosyl hydrolases family 17 protein (.1) AT2G16230 73 / 9e-16 O-Glycosyl hydrolases family 17 protein (.1) AT3G07320 71 / 4e-15 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 71 / 6e-15 O-Glycosyl hydrolases family 17 protein (.1) AT2G26600 69 / 2e-14 Glycosyl hydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004391 [exp] 142 / 3e-41 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 129 / 3e-36 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040600 [exp] 128 / 7e-36 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10032562 [exp] 105 / 2e-27 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 84 / 2e-19 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10038211 [exp] 75 / 2e-16 AT3G07320 614 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10025892 [exp] 74 / 4e-16 AT3G07320 545 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10042269 [exp] 74 / 6e-16 AT5G58480 606 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001660 [exp] 70 / 1e-14 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G094400 [exp] 100 / 3e-25 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G247900 [exp] 82 / 4e-19 AT3G07320 653 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 81 / 1e-18 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247800 [exp] 77 / 3e-17 AT3G07320 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G055900 [exp] 74 / 2e-16 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 74 / 4e-16 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G076500 [exp] 71 / 3e-15 AT5G58480 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G203800 [exp] 71 / 5e-15 AT3G55430 354 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G192200 [exp] 71 / 6e-15 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.018G129500 [exp] 70 / 8e-15 AT2G26600 543 / 0.0 Glycosyl hydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10011852 pacid=23169245 polypeptide=Lus10011852 locus=Lus10011852.g ID=Lus10011852.BGIv1.0 annot-version=v1.0 ATGGCTACCTTCTCCAAGATTCCAATGTCATTGTTCATCCTCCTAGCTCTCATCTGCACTTTGGTTCCCGCAGACGCAGCTGTTGAAGGAAGATTCATCG GAGTCAACTACGGCAGACTCGCCACCAGCCTACCCTCACCGGCCCAAGTAGTAGAGCTCCTCAAATCTCAAGGAATCACCTTAGTCAAGATCTTCGACGC CAACTCCGATGTCTTCACAGCCCTCGCCGGCTCCAACATCTCCAACATCTCCGTCACCGTTTGTCTTCCCAACGGGTTTGTCTCTGCCGCTGCCGCCGAC CAAACCGTTGCCGACTACTGGGTCCACTCCAACATCTCCCCTTTCTACACTCTTCCACCAATTTTGAAGCCATCGCCATCGGGAACGAGTTTGCCGTCCC TTATCTTGTACCGGCGATGA
AA sequence Show only first row Show all	>Lus10011852 pacid=23169245 polypeptide=Lus10011852 locus=Lus10011852.g ID=Lus10011852.BGIv1.0 annot-version=v1.0 MATFSKIPMSLFILLALICTLVPADAAVEGRFIGVNYGRLATSLPSPAQVVELLKSQGITLVKIFDANSDVFTALAGSNISNISVTVCLPNGFVSAAAAD QTVADYWVHSNISPFYTLPPILKPSPSGTSLPSLILYRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26830			O-Glycosyl hydrolases family 1...		Lus10011852 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10005827 [exp]	2.8	0.7574
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10001493 [exp]	5.6	0.7711
AT4G37110			Zinc-finger domain of monoamin...		Lus10021004 [exp]	8.4	0.7103
AT3G46570			Glycosyl hydrolase superfamily...		Lus10000070 [exp]	11.9	0.7196
					Lus10024012 [exp]	16.6	0.6972
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Lus10004224 [exp]	17.3	0.6577
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	22.3	0.7110
					Lus10004902 [exp]	23.3	0.6574
					Lus10038003 [exp]	24.7	0.6616
AT5G52850			Pentatricopeptide repeat (PPR)...		Lus10038834 [exp]	25.0	0.6493

Compare expression of checked genes

Lus10011852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.