Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24840 532 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G55690 395 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G39170 384 / 2e-126 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21540 363 / 3e-119 ATSFH3 SEC14-like 3 (.1.2.3) AT4G39180 363 / 3e-119 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 359 / 1e-116 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 348 / 2e-113 ATSFH12 SEC14-like 12 (.1) AT2G18180 348 / 4e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G19650 337 / 1e-108 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 335 / 2e-107 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022790 [exp] 1020 / 0 AT3G24840 650 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10038176 [exp] 802 / 0 AT3G24840 551 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025924 [exp] 726 / 0 AT3G24840 520 / 7e-180 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10042303 [exp] 369 / 1e-121 AT2G21540 598 / 0.0 SEC14-like 3 (.1.2.3) Lus10023546 [exp] 369 / 1e-120 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10008360 [exp] 371 / 4e-120 AT1G55690 668 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10042302 [exp] 362 / 1e-117 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 361 / 1e-116 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 352 / 5e-114 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G243000 [exp] 675 / 0 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G471300 [exp] 401 / 4e-133 AT1G55690 714 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G119700 [exp] 390 / 3e-129 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.009G119500 [exp] 385 / 1e-126 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.007G020300 [exp] 377 / 1e-124 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.004G157700 [exp] 378 / 6e-124 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 363 / 2e-118 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.011G168300 [exp] 358 / 1e-116 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G230500 [exp] 357 / 8e-116 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157600 [exp] 354 / 3e-115 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10011853 pacid=23169250 polypeptide=Lus10011853 locus=Lus10011853.g ID=Lus10011853.BGIv1.0 annot-version=v1.0 ATGCCAGGAGATGTATCGGCGGCTTTCTATCAAGAGAGCGGCAAGGCTAAAGCGTTGGATCTGGAGACGTCTGAGGACGAGAAACAGCGGAGGGCGAGAG GGAGGTCGTTGAGGAAGAAGGCGATGAGTGCTTCGAACAAGCTGACGCACAGCCTTAGGAAGCGTAGCAGGAGAGTGGCTGATTGTAGATTTGCCGCGAT CTCTGTTAACGATGTCAGGGATGCGAAGGAGGAGGCCGCTGTTATTGCGTTCCGTCAGGCGTTGGGTACGAAGGAGTTGCTACCTCGGCGGCACGATGAT TATCACACTCTTTTGAGGTTTCTGAAGGCGAGGAAGTTTGACCTTGACAAAACTATCCTCATGTGGTCAGAAATGCTTAACTGGAGAAAAGAAAACGGAA TCGATTCCATTCTGCAGGATTTTGTATTTGAGGAGTTCGAAGAGGTACAACGGTATTATCCTCATGGTTACCATGGGGTAGACAAAGGAGGCAGACCTGT TTATATTGAAAGACTTGGAAAGGTAGAACCTAACAAGCTAATGAATGTGACTACAGTGGACCGATTTTTGAAGTACCACGTTCAGGGATTTGAGAGGGCA TTTTCGGAGAAGTTCCCTGCATGCTCCATTGCAGCTAAGAGGCACATAGATTCTACAGTAACCATACTTGACGCGCATGGATTGAATTGGATGAGCTTTG GCAAGGTTGCAAATGACCTTGTTATGCGCATGCAAAAGATTGACGGGGACAACTACCCCGAGGTTTTAGGCAACAAGTTCCAAAGCAAGCTGTTGGAGAT CATCGACTCAAGTCAATTGCCAGACTTTCTTGGTGGAACCTGCCGCTGTGCTGATGAAGGCGGTTGTCTTAGGTCTGAGAAGGGACCATGGAAGGATCCA GAGATAATGAAACTGGTACATGCTGGAGACGCATTGTACCTAAAAACAATGAGATCTTTTTCAGATGACGAGGACATAGATATTAAGTTATTTGCCTCCA AGACATCAAGAAGTGAGATTACAACTGCTGATGCAAGCCCAGAATTGAGGCCAACTAGAGATTCCAGTCAACAAGTCCCTTCAGATTTTATCTTACAAAG AGCAGTTGCTAATCAATCTACTCACAGCCAAACAATCGAACGCCATCTTGCGAGTGTCCAGGTCGCTAATCAAACAAATACCACAACTGAGGTTGTTTCC GTAGAAAGTCCCGGCAGAACGCGATTTCTTCTTCACATCGTGGTTAAATTATTAGCTTGGATATACCTAGTTCTCCCAAGGATGCGGAGACTATTCGCAG CACAGCATCCAAACAGACAATTACAGATCCAACCTCAGCCACTATTGGTAGATTCAAGTCCGCACGAGTCACAAGTCTTGCAGGAATCCAACGAGGAGAA GTTGAATCCGTGCTGGGAGAGGCTGCAACATTTGGAGAAAATGGTCAACGACCTCGTTAACAAACCCACTAACATCCCTCCTGAGAAAGAAGACATGATT CTCGACTCTTTAAGTCGTATTAGAGGCATCGAATATGACCTCCAGAAGACCAAGAAGGCACTTCTGGCAACAGCATCAAAACAAGTCGAGCTTGCCGAAT CACTTGAAAATTTAAAAGACTTCAGATCACCCGGTCCAAACTCTTGCTGGCCGAGACATTGCAAGCCGTATATCCCGGAATGA
AA sequence Show only first row Show all	>Lus10011853 pacid=23169250 polypeptide=Lus10011853 locus=Lus10011853.g ID=Lus10011853.BGIv1.0 annot-version=v1.0 MPGDVSAAFYQESGKAKALDLETSEDEKQRRARGRSLRKKAMSASNKLTHSLRKRSRRVADCRFAAISVNDVRDAKEEAAVIAFRQALGTKELLPRRHDD YHTLLRFLKARKFDLDKTILMWSEMLNWRKENGIDSILQDFVFEEFEEVQRYYPHGYHGVDKGGRPVYIERLGKVEPNKLMNVTTVDRFLKYHVQGFERA FSEKFPACSIAAKRHIDSTVTILDAHGLNWMSFGKVANDLVMRMQKIDGDNYPEVLGNKFQSKLLEIIDSSQLPDFLGGTCRCADEGGCLRSEKGPWKDP EIMKLVHAGDALYLKTMRSFSDDEDIDIKLFASKTSRSEITTADASPELRPTRDSSQQVPSDFILQRAVANQSTHSQTIERHLASVQVANQTNTTTEVVS VESPGRTRFLLHIVVKLLAWIYLVLPRMRRLFAAQHPNRQLQIQPQPLLVDSSPHESQVLQESNEEKLNPCWERLQHLEKMVNDLVNKPTNIPPEKEDMI LDSLSRIRGIEYDLQKTKKALLATASKQVELAESLENLKDFRSPGPNSCWPRHCKPYIPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10011853 [exp]	0	1
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10022790 [exp]	1.0	0.9405
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10035993 [exp]	2.4	0.8784
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004597 [exp]	4.2	0.8528
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10016989 [exp]	4.6	0.8272
AT4G37640		ACA2	calcium ATPase 2 (.1)		Lus10025199 [exp]	4.8	0.7591
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	5.9	0.8338
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10021710 [exp]	7.1	0.8119
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10023406 [exp]	8.5	0.8265
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	10.6	0.8398
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10029864 [exp]	11.0	0.7586

Compare expression of checked genes

Lus10011853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.