Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13630 117 / 1e-27 Protein of unknown function, DUF593 (.1.2) AT4G13160 102 / 4e-24 Protein of unknown function, DUF593 (.1) AT1G04890 97 / 1e-21 Protein of unknown function, DUF593 (.1) AT1G70750 69 / 4e-12 Protein of unknown function, DUF593 (.1) AT5G16720 66 / 3e-11 Protein of unknown function, DUF593 (.1) AT1G08800 65 / 1e-10 Protein of unknown function, DUF593 (.1.2) AT5G06560 61 / 9e-10 Protein of unknown function, DUF593 (.1) AT3G54740 59 / 4e-09 Protein of unknown function, DUF593 (.1.2) AT3G11850 57 / 2e-08 Protein of unknown function, DUF593 (.1.2) AT1G18990 52 / 1e-06 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022791 [exp] 813 / 0 AT4G13630 200 / 2e-57 Protein of unknown function, DUF593 (.1.2) Lus10007129 [exp] 108 / 9e-25 AT4G13630 160 / 7e-42 Protein of unknown function, DUF593 (.1.2) Lus10016673 [exp] 108 / 1e-24 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2) Lus10004050 [exp] 79 / 3e-15 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10006566 [exp] 68 / 2e-11 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2) Lus10015990 [exp] 67 / 2e-11 AT5G06560 467 / 8e-162 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 66 / 8e-11 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1) Lus10012288 [exp] 64 / 1e-10 AT5G06560 464 / 2e-160 Protein of unknown function, DUF593 (.1) Lus10005527 [exp] 64 / 2e-10 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242900 [exp] 144 / 2e-36 AT4G13630 187 / 3e-51 Protein of unknown function, DUF593 (.1.2) Potri.017G055100 [exp] 107 / 4e-24 AT4G13630 211 / 2e-59 Protein of unknown function, DUF593 (.1.2) Potri.005G220600 [exp] 68 / 1e-11 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.019G012200 [exp] 66 / 4e-11 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.019G007802 [exp] 64 / 1e-10 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.002G042500 [exp] 64 / 1e-10 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.017G129200 [exp] 64 / 2e-10 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.013G043400 [exp] 64 / 3e-10 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.004G087600 [exp] 63 / 4e-10 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 63 / 4e-10 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10011854 pacid=23169197 polypeptide=Lus10011854 locus=Lus10011854.g ID=Lus10011854.BGIv1.0 annot-version=v1.0 ATGGGCCGAGTTAGGGAAGTTCATACCTGGAATTTAGCCGGACTAGCGGCGGCGTTTGTCGATCTAGCGATTACTTATACACTTCTCTGTGTATCATCTT TCTTCTTCGTTCCTTCCAAATTGCTAAGCGTTTTAGGGATCAGGTTCCCTTGCCCCTGCTGTGGCTCCTTCAATAGCAGCGGCGGCGGCGAGCTCTGCTT TTATAGGCTGCTGATTAGTTGGCCGATTAAGAAGATCGTCTCCGTTCAGGAGCTGGTTAAGAGTAGGTTTCCTTTTGATCTGGTCTGCTGTAACGATTAC GATTGCGGATCAGAGGCCAGATTAGGAAACGATGATGATGGTGGTATCAAGGGGAGGAAGTCTGCTGCGAGTAGTCAGAAGCAGCAGCACAAGTTGTCTG CGGAGAGGAGGAGAAGGAGAGCTGCTGGAATCGCGTATCGTAAGCTTTCGTCCACTGGGAATGGAGGTCAAATTGGTGGAAGGAGTGGCATTGATTCTGT GGATGGAGGTGAAGACGGTGTTCATCATCCATTGGGACTTGGGAATGCTTCAAGTGCAAGTTTTGATCCTACATGTGAGAAGGGGAAATGCATCAGTGAG GCTTCATCTTCAACTGTTGAGAAGTCTGTATGCATCGTGGAAGATGGAACAGATAGTGTGGCGAAGTTGATGAATACTATCAGAAATCTGGAACAAGCAC TTGAAGAAGAGAAATCCGCACGCACCGCAGTTTACCAAGAGCTGGAGAAGGAGAGGGCGGCTTCTGCAAGCGCGGCTGACGAAGCGATGGCCATGATATA TCGGTTGCAGGAAGAGAAGGCGTCGCTGAAGATGGAGTTGAGGCAGAGTCGGAGGATAGTGGAGGAGAAGTTTGCTTACGACGAAGAGGAGATGAACATG CTGCAGGAGATTCTCATTAGGCGGGAAAGAGAGATCCATTTCCTCGAGAAGGAAGTCGAAGAATTTCAGCAGATGAGCTCGCCAACGAACGGGGATATGA GTCCGCTATCTCCGGTGCCATGGAATGTTGACTTCAACTCAGCTTATGAGGACGAAGTCGAAATAAGGGCGCATTTGTCGTCGATTTGTGAAAGAACTGC TAGTTCGTCTCCACTATCGAAGCATAAGGATTTACGTTTCGATCTAGCTCCTATCCCGGAAGAGTTTCCAGAACAGAAAGAGGAATTGCTCGAAAAACCG GAAGGAAATGGTGAGAATGGGGATCAAGGAGATATCGGTACGTTTGGTCCCGTGGCTGACACGGAATTGACTGTATATGATGTCCATGTCATAGATGATG AGGCAATTCATAAGAATCATGGTAATACTTGGAAGGGAGTTGACTCGGAGAGTCCATCTGCCGTTGATGGCGAAAGGCCAACGTTTGACCCGGAAGTCGG ATGGCTCCAGGAAAGGCTGAGAATTGTACAGCAGGAGAGGGAGAACTTAACTTTCTCTGCTGAGAACAGGGAGAAATTCAGTAGCCAGCTGAAAGTGATG GAAGAAATCGTCAGCCAGCTTCGAGAGATCCAACACCACAAAGAACCAGTTAAGGTAAGTCTCTCCTGTACTGAATGTCTGGGTTGTTACATTAGCTTGA ACTGGTACATGACTTCATCATTTCAATGTACGTGTCGATTGAGCTAA
AA sequence Show only first row Show all	>Lus10011854 pacid=23169197 polypeptide=Lus10011854 locus=Lus10011854.g ID=Lus10011854.BGIv1.0 annot-version=v1.0 MGRVREVHTWNLAGLAAAFVDLAITYTLLCVSSFFFVPSKLLSVLGIRFPCPCCGSFNSSGGGELCFYRLLISWPIKKIVSVQELVKSRFPFDLVCCNDY DCGSEARLGNDDDGGIKGRKSAASSQKQQHKLSAERRRRRAAGIAYRKLSSTGNGGQIGGRSGIDSVDGGEDGVHHPLGLGNASSASFDPTCEKGKCISE ASSSTVEKSVCIVEDGTDSVAKLMNTIRNLEQALEEEKSARTAVYQELEKERAASASAADEAMAMIYRLQEEKASLKMELRQSRRIVEEKFAYDEEEMNM LQEILIRREREIHFLEKEVEEFQQMSSPTNGDMSPLSPVPWNVDFNSAYEDEVEIRAHLSSICERTASSSPLSKHKDLRFDLAPIPEEFPEQKEELLEKP EGNGENGDQGDIGTFGPVADTELTVYDVHVIDDEAIHKNHGNTWKGVDSESPSAVDGERPTFDPEVGWLQERLRIVQQERENLTFSAENREKFSSQLKVM EEIVSQLREIQHHKEPVKVSLSCTECLGCYISLNWYMTSSFQCTCRLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13630			Protein of unknown function, D...		Lus10011854 [exp]	0	1
AT4G13630			Protein of unknown function, D...		Lus10022791 [exp]	1.4	0.9111
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	3.0	0.9227
AT3G61180			RING/U-box superfamily protein...		Lus10029582 [exp]	4.9	0.8994
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020322 [exp]	5.5	0.9097
AT4G29010		AIM1	ABNORMAL INFLORESCENCE MERISTE...		Lus10011102 [exp]	6.3	0.8607
AT3G47160			RING/U-box superfamily protein...		Lus10011390 [exp]	6.7	0.8707
AT3G15890			Protein kinase superfamily pro...		Lus10011490 [exp]	8.4	0.8802
AT1G22040			Galactose oxidase/kelch repeat...		Lus10020960 [exp]	8.4	0.8942
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	9.2	0.8984
AT5G01960			RING/U-box superfamily protein...		Lus10000996 [exp]	10.0	0.8563

Compare expression of checked genes

Lus10011854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.