Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14460 58 / 1e-09 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G58400 44 / 6e-05 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59218 43 / 0.0001 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 43 / 0.0001 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58807 40 / 0.0007 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G43470 40 / 0.001 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022792 [exp] 362 / 2e-119 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10003571 [exp] 184 / 1e-53 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 181 / 2e-52 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) Lus10002609 [exp] 179 / 7e-52 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10004127 [exp] 178 / 1e-51 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10022900 [exp] 167 / 7e-48 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10032782 [exp] 147 / 1e-44 AT3G14460 57 / 1e-09 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10020361 [exp] 114 / 6e-31 AT3G03470 67 / 2e-12 "cytochrome P450, family 87, subfamily A, polypeptide 9", cytochrome P450, family 87, subfamily A, polypeptide 9 (.1) Lus10029705 [exp] 103 / 3e-26 AT3G14460 112 / 5e-27 LRR and NB-ARC domains-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G212200 [exp] 97 / 3e-23 AT3G14470 392 / 8e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123200 [exp] 87 / 6e-20 AT3G14470 407 / 1e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123500 [exp] 87 / 1e-19 AT3G14470 395 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121851 [exp] 87 / 1e-19 AT3G14470 348 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122900 [exp] 84 / 1e-18 AT3G14470 414 / 6e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122200 [exp] 81 / 2e-17 AT3G14470 411 / 2e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.001G025400 [exp] 80 / 3e-17 AT3G14470 558 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121900 [exp] 79 / 6e-17 AT3G14470 399 / 2e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123400 [exp] 79 / 7e-17 AT3G14470 376 / 2e-115 NB-ARC domain-containing disease resistance protein (.1) Potri.015G121800 [exp] 76 / 8e-16 AT3G14470 377 / 3e-114 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011856 pacid=23169226 polypeptide=Lus10011856 locus=Lus10011856.g ID=Lus10011856.BGIv1.0 annot-version=v1.0 ATGAATCGGCTTCGTGGAACACTTAGGGTGGTTGGTCTAAGGAATGTGGCTTATTGCAATGAGGTGGAGCAAGCAAATTTTGCAGGGAAAACGGGTCTAA ACTGTCTGTGGCTTACTTTCTGCAACGTCCGAGCACCACCGGTAATAGGTGCGAGTGGCAAAAAGGATGAAGAAGTGCTGGAAGCAGCAAGGCCATCAAC AAACTTGGAAGAACTCAATATAGAAGATTATAAAGGTGCTTTGATATCACCTAGCTGGATGATGTCTGTCACTAACTTGACTCGCATCAAGGTAATCAAT TGCGAGGTGGAGTATCTGCCTTGCTTAGGGGGTCTGCCGTGCCTCGAACAAGTGTGTTTCGAGTGGATTCCGAAAGTGAAGAAGGTGGGTATGGAATTTT TGGGACAAGAGCGCGAACAGAGCATTAGAGCATTTCCTAGGCTAACTACTCTTCAGTTTGAGTCTATGCTCAACTGGGAAGAGTGGGATGGGGCGTTGTT ATCTTTGTCGTCAGTGATGCCCCGACTTCGTACATTGTCCATGACATGTTGCCGAAAGTTGAATGAGTTGCCGCAGTCGATTCTCCAGAAACCAACGCTG GAACATCTGGAAGTATAG
AA sequence Show only first row Show all	>Lus10011856 pacid=23169226 polypeptide=Lus10011856 locus=Lus10011856.g ID=Lus10011856.BGIv1.0 annot-version=v1.0 MNRLRGTLRVVGLRNVAYCNEVEQANFAGKTGLNCLWLTFCNVRAPPVIGASGKKDEEVLEAARPSTNLEELNIEDYKGALISPSWMMSVTNLTRIKVIN CEVEYLPCLGGLPCLEQVCFEWIPKVKKVGMEFLGQEREQSIRAFPRLTTLQFESMLNWEEWDGALLSLSSVMPRLRTLSMTCCRKLNELPQSILQKPTL EHLEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14460			LRR and NB-ARC domains-contain...		Lus10011856 [exp]	0	1
AT5G03860		MLS	malate synthase (.1.2)		Lus10006282 [exp]	2.0	0.7748
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10017904 [exp]	16.2	0.7011
AT3G15670			Late embryogenesis abundant pr...		Lus10004395 [exp]	20.2	0.7065
					Lus10029652 [exp]	26.5	0.7008
					Lus10008385 [exp]	30.3	0.6962
					Lus10011425 [exp]	34.6	0.6796
					Lus10011832 [exp]	37.4	0.6796
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10031524 [exp]	40.0	0.6796
					Lus10028667 [exp]	42.4	0.6796
					Lus10029072 [exp]	44.7	0.6796

Compare expression of checked genes

Lus10011856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.