Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48760 359 / 4e-128 Ribosomal protein L13 family protein (.1.2) AT4G13170 357 / 4e-127 Ribosomal protein L13 family protein (.1) AT3G24830 353 / 1e-125 Ribosomal protein L13 family protein (.1) AT3G07110 352 / 2e-125 Ribosomal protein L13 family protein (.1.2) AT1G78630 54 / 6e-09 EMB1473 embryo defective 1473, Ribosomal protein L13 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022793 [exp] 378 / 2e-135 AT5G48760 390 / 2e-140 Ribosomal protein L13 family protein (.1.2) Lus10016679 [exp] 358 / 8e-128 AT5G48760 386 / 9e-139 Ribosomal protein L13 family protein (.1.2) Lus10007137 [exp] 355 / 3e-126 AT5G48760 384 / 6e-138 Ribosomal protein L13 family protein (.1.2) Lus10043151 [exp] 352 / 4e-125 AT5G48760 380 / 2e-136 Ribosomal protein L13 family protein (.1.2) Lus10032599 [exp] 352 / 4e-125 AT5G48760 380 / 2e-136 Ribosomal protein L13 family protein (.1.2) Lus10005553 [exp] 46 / 5e-06 AT1G78630 332 / 8e-116 embryo defective 1473, Ribosomal protein L13 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314500 [exp] 350 / 2e-124 AT5G48760 384 / 7e-138 Ribosomal protein L13 family protein (.1.2) Potri.002G242600 [exp] 348 / 7e-124 AT4G13170 357 / 4e-127 Ribosomal protein L13 family protein (.1) Potri.017G054600 [exp] 344 / 5e-122 AT5G48760 351 / 5e-125 Ribosomal protein L13 family protein (.1.2) Potri.001G384600 [exp] 49 / 5e-07 AT1G78630 351 / 1e-123 embryo defective 1473, Ribosomal protein L13 family protein (.1) Potri.011G106100 [exp] 48 / 1e-06 AT1G78630 342 / 3e-120 embryo defective 1473, Ribosomal protein L13 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00572 [flax] [poplar] Ribosomal_L13 Ribosomal protein L13
Representative CDS sequence Show only first row Show all	>Lus10011857 pacid=23169190 polypeptide=Lus10011857 locus=Lus10011857.g ID=Lus10011857.BGIv1.0 annot-version=v1.0 ATGGTGTCCGGATCGGGGATCTGCGCAAAGAGGGTGGTGGTGGACGCAAGGCACCACATGCTCGGACGGCTGGCGTCGATCACGGCGAAGGAGCTGCTCA ATGGCCAGAAAGTGGTGGTCGTGAGGTGCGAGGAGATCTGCATGTCCGGCGGACTGGTGCGCCAGAAGATGAAATACATGAGGTTCCTCCGCAAGCGGAT GAACACCAAGCCTTCTCACGGTCCCATTCACTTCCGCGCCCCTTCCAAGATCTTCTGGCGAACTGTTCGCGGAATGATTCCTCACAAGACAAAGAGAGGA GAAGCTGCACTTGCAAGGTTGAAGGTTTACGAAGGAGTCCCACCTCCATATGACAAGGTCAAGAGAATGGTTGTCCCTGATGCTCTCAAGGTTTTGAGGC TCCAGAAGGGACACAAATACTGCTTGCTGGGTCAGCTTTCAGCACAGGTCGGATGGAACTACTATGACACCATCAAGGAGCTGGAGGAGAGGAGAAAAGA GAAGGCTAAGGTGGTGTACGAGAGGAAGAAGCAGCTGAACAAGCTGAGGGCAAAGGCTGAGAAGGTAGCAGAGGAGAAGCTTGGCTCCCAATTAGATATC CTCGCACCGGTCAAGTACTGA
AA sequence Show only first row Show all	>Lus10011857 pacid=23169190 polypeptide=Lus10011857 locus=Lus10011857.g ID=Lus10011857.BGIv1.0 annot-version=v1.0 MVSGSGICAKRVVVDARHHMLGRLASITAKELLNGQKVVVVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRG EAALARLKVYEGVPPPYDKVKRMVVPDALKVLRLQKGHKYCLLGQLSAQVGWNYYDTIKELEERRKEKAKVVYERKKQLNKLRAKAEKVAEEKLGSQLDI LAPVKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48760			Ribosomal protein L13 family p...		Lus10011857 [exp]	0	1
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10002338 [exp]	1.0	0.9547
AT5G60670			Ribosomal protein L11 family p...		Lus10023186 [exp]	1.4	0.9504
AT3G02080			Ribosomal protein S19e family ...		Lus10030702 [exp]	2.0	0.9334
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10020794 [exp]	3.0	0.9403
AT1G09590			Translation protein SH3-like f...		Lus10016241 [exp]	6.3	0.9029
AT3G02080			Ribosomal protein S19e family ...		Lus10013188 [exp]	6.3	0.9180
AT5G48760			Ribosomal protein L13 family p...		Lus10022793 [exp]	6.7	0.8954
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10031485 [exp]	7.7	0.9290
AT3G53740			Ribosomal protein L36e family ...		Lus10025342 [exp]	7.9	0.9079
AT1G80560		ATIMD2	ARABIDOPSIS ISOPROPYLMALATE DE...		Lus10030344 [exp]	7.9	0.8798

Compare expression of checked genes

Lus10011857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.