Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58430 259 / 2e-82 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G07000 188 / 7e-56 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1) AT5G50380 118 / 4e-30 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G72470 110 / 1e-27 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 105 / 7e-26 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 105 / 1e-25 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G03540 97 / 8e-23 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT3G09520 87 / 2e-19 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT5G52340 82 / 1e-17 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G59730 81 / 2e-17 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022795 [exp] 365 / 5e-123 AT5G58430 796 / 0.0 exocyst subunit exo70 family protein B1 (.1) Lus10022459 [exp] 119 / 1e-30 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10016764 [exp] 117 / 1e-29 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10008126 [exp] 113 / 3e-28 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 100 / 5e-24 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10035146 [exp] 95 / 4e-22 AT3G29400 579 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10034151 [exp] 95 / 5e-22 AT5G03540 991 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10031956 [exp] 94 / 1e-21 AT3G29400 581 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10043432 [exp] 94 / 2e-21 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152900 [exp] 233 / 2e-72 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.019G124000 [exp] 228 / 1e-70 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.001G166400 [exp] 129 / 4e-34 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 127 / 2e-33 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.003G068700 [exp] 125 / 1e-32 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.012G097100 [exp] 121 / 4e-31 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.015G058200 [exp] 92 / 5e-21 AT5G61010 585 / 0.0 exocyst subunit exo70 family protein E2 (.1.2) Potri.010G241800 [exp] 91 / 9e-21 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.008G017800 [exp] 91 / 2e-20 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.017G093966 [exp] 88 / 1e-19 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10011860 pacid=23169215 polypeptide=Lus10011860 locus=Lus10011860.g ID=Lus10011860.BGIv1.0 annot-version=v1.0 ATGGCGGCGGGGGATAAGGCTGTGGAAGCTTCGTTGCTGCGAGCTGATGACTTGATGCAGCAGGCGGTTTTCCGCCTCGAGGAGGAGTTCCGGATGTTGA TGGAGCGGGGAGGGGAGTCGTTTGAGGTGAATCGAAGGAGGCGGCGGAATAACAACGGTGAGTCGCCTGCTGACTGGTGTGACTCCGATGAGGAGGAGGG GGAAGAGGAAGAAGAAGACGATGTTCCTTCGACGACGAACGGAGATTTCAATGATTATATCCCTGTCGCGCAGCCTTTGACGGACTACGACGTGGTGATC GATGCGCTTCCGTCGGGGACGATTAACGACCTCCACGAGATTGCCAAGCGGATGGTGGCGGCAGGGTTCGCCAAGGAGTGTTCGCATGTCTACAGCAGCT GCCGGAGGGAGTTTCTCGAAGAGAGCGTCAGTAGGTTAGGGTTACAGCAGAAGCTGAGCATCGAGGAGGTTCAGAAGATGTCGTGGCAAGATCTGGAGGA CGAAATCGAGAAGTGGATCAAAGCGGCGAACGTTCTCCTCCGAATCCTCTTCCCCAGCGAGCGCCGCCTTTGCGACCGAGTCTTCTTCGGATTCACCTCC GCCGCCGATCTCTCGTTCATGGAGGTATGCCGCGGGTCGACGATCCAGATCCTGAACTTCGCCGTAGGGATAGCGATCGGTANNNNNNNNNNNNNNNNNG CCCGAGCGGCTGTTCAAGATTCTGGATCTGTTCGAGACGTTGAGGGATTTGATCCCTGA
AA sequence Show only first row Show all	>Lus10011860 pacid=23169215 polypeptide=Lus10011860 locus=Lus10011860.g ID=Lus10011860.BGIv1.0 annot-version=v1.0 MAAGDKAVEASLLRADDLMQQAVFRLEEEFRMLMERGGESFEVNRRRRRNNNGESPADWCDSDEEEGEEEEEDDVPSTTNGDFNDYIPVAQPLTDYDVVI DALPSGTINDLHEIAKRMVAAGFAKECSHVYSSCRREFLEESVSRLGLQQKLSIEEVQKMSWQDLEDEIEKWIKAANVLLRILFPSERRLCDRVFFGFTS AADLSFMEVCRGSTIQILNFAVGIAIGXXXXXXARAAVQDSGSVRDVEGFDP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011860 [exp]	0	1
AT3G09830			Protein kinase superfamily pro...		Lus10013811 [exp]	1.0	0.7781
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011859 [exp]	1.7	0.7668
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10007346 [exp]	8.2	0.7575
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10036225 [exp]	8.5	0.7707
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003113 [exp]	18.0	0.6776
AT2G27500			Glycosyl hydrolase superfamily...		Lus10020618 [exp]	18.3	0.6837
AT3G13340			Transducin/WD40 repeat-like su...		Lus10041268 [exp]	18.7	0.7323
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	23.5	0.6996
AT2G01890		PAP8, ATPAP8	purple acid phosphatase 8 (.1....		Lus10019133 [exp]	23.5	0.6725
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10022795 [exp]	23.5	0.7272

Compare expression of checked genes

Lus10011860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.