Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58430 304 / 5e-100 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G07000 238 / 7e-75 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1) AT5G13150 209 / 2e-63 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G13990 207 / 2e-62 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1) AT1G72470 174 / 3e-50 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT5G50380 174 / 3e-50 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT3G14090 172 / 2e-49 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 168 / 5e-48 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G52340 152 / 3e-42 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G03540 149 / 1e-41 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022795 [exp] 480 / 1e-167 AT5G58430 796 / 0.0 exocyst subunit exo70 family protein B1 (.1) Lus10011334 [exp] 209 / 2e-63 AT5G13150 541 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10003142 [exp] 204 / 1e-61 AT5G13150 548 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10015757 [exp] 205 / 2e-61 AT5G13150 585 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10041536 [exp] 194 / 1e-56 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10012555 [exp] 191 / 2e-55 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10013163 [exp] 176 / 2e-52 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10008126 [exp] 176 / 7e-51 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10022459 [exp] 165 / 3e-47 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G124000 [exp] 334 / 2e-111 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.013G152900 [exp] 332 / 6e-111 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.001G060700 [exp] 214 / 7e-65 AT5G13150 658 / 0.0 exocyst subunit exo70 family protein C1 (.1) Potri.001G325600 [exp] 199 / 3e-59 AT5G13990 662 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.017G068000 [exp] 195 / 1e-57 AT5G13990 640 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.015G094800 [exp] 189 / 9e-56 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 188 / 2e-55 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 176 / 3e-51 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 174 / 2e-50 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.017G093966 [exp] 160 / 5e-45 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10011861 pacid=23169222 polypeptide=Lus10011861 locus=Lus10011861.g ID=Lus10011861.BGIv1.0 annot-version=v1.0 ATGGAGTTAGAGAATCTAATCCGGCGTGATCCAGCTAAGGATCCGGTTCCCGGCGGAGGTCTTCATCCGATCACACGGTATGTGATGAACTATCTCCTTG CTGCTTGCCGATCCAGAGATTCTCTGGAGCAGGTGTTTGAGGACAGTCTTAATGGCGGCGGCATTGGCTCCAAGGATTCTTCCTCCTCGCCATTGTCGGT TCAGATGGAATGGATCATGGAGCTGCTAGAGAGCAATTTGGAGATGAAGTCGAAGATTTACAACGATCCAGCATTGTCGTCTGTGTTCATGATGAACAAT GAGAGGTACATTGTGAAGAAGGTGAAAGACATCGATCCGAAGAACAGTCAGTTAGGTGCATTACTCGGAGAGGATTGGATCAGGAAACACACTGCTAAAG TGAAGCAGTTCCATTTGAGCTACCAGAGAAGCTCCTGGAATAAGATATTGACAGTGTTGAAGATTGACAGTAACTCCCCTGGAAGTTCTAACAAGCCTAT GTCAATGAAGGAGAAGATCAAGCTGTTTAATTCTCTGTTTGAGGATGTTTACAAGAGTCAGTCTCATTGGATCATATTTGATGAACAGCTGAAGAAGGAT ATAAAGATCTCTTTGTCCAACCTTCTGCTGCCTGTTTATGGAAGCTTCGTCTGCCGGTTCCAGAATTCTCCTGATGCCGGAAGGCATGTGGATAAGTACA TTAAGTACAGTTCCGACGATGTCGAGTTTAGGATTAATCATTTGTTCCAGGGTGGCACTGGCAGGAAATGA
AA sequence Show only first row Show all	>Lus10011861 pacid=23169222 polypeptide=Lus10011861 locus=Lus10011861.g ID=Lus10011861.BGIv1.0 annot-version=v1.0 MELENLIRRDPAKDPVPGGGLHPITRYVMNYLLAACRSRDSLEQVFEDSLNGGGIGSKDSSSSPLSVQMEWIMELLESNLEMKSKIYNDPALSSVFMMNN ERYIVKKVKDIDPKNSQLGALLGEDWIRKHTAKVKQFHLSYQRSSWNKILTVLKIDSNSPGSSNKPMSMKEKIKLFNSLFEDVYKSQSHWIIFDEQLKKD IKISLSNLLLPVYGSFVCRFQNSPDAGRHVDKYIKYSSDDVEFRINHLFQGGTGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011861 [exp]	0	1
AT4G28400			Protein phosphatase 2C family ...		Lus10039853 [exp]	3.0	0.8589
AT3G48170		ALDH10A9	aldehyde dehydrogenase 10A9 (....		Lus10034115 [exp]	3.7	0.8221
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10001725 [exp]	3.9	0.8371
AT2G30440		Plsp2B, TPP	plastidic type I signal peptid...		Lus10011671 [exp]	6.2	0.8418
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	9.1	0.8566
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10033493 [exp]	9.4	0.8208
AT2G17760			Eukaryotic aspartyl protease f...		Lus10028411 [exp]	13.4	0.8343
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10021561 [exp]	14.5	0.8176
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	16.2	0.8138
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10042776 [exp]	17.5	0.8153

Compare expression of checked genes

Lus10011861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.