Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48820 104 / 2e-27 ICK6, KRP3 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) AT2G32710 98 / 3e-24 ICK7, ACK2, KRP4 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) AT3G24810 77 / 5e-17 ICK3, KRP5 kip-related protein 5, Cyclin-dependent kinase inhibitor family protein (.1) AT1G49620 70 / 1e-14 ICN6, ICK5, KRP7 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) AT3G19150 60 / 5e-11 ACK1, ICK4, KRP6 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2) AT2G23430 49 / 8e-07 ICK1, KRP1 KIP-RELATED PROTEIN 1, Cyclin-dependent kinase inhibitor family protein (.1) AT3G50630 45 / 2e-05 ICK2, KRP2 KIP-related protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022796 [exp] 224 / 9e-74 AT5G48820 94 / 4e-23 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Lus10043139 [exp] 100 / 2e-25 AT2G32710 143 / 2e-41 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) Lus10032611 [exp] 100 / 3e-25 AT2G32710 139 / 1e-39 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242100 [exp] 117 / 4e-32 AT5G48820 177 / 6e-56 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.017G054000 [exp] 108 / 8e-29 AT5G48820 127 / 3e-36 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.001G314000 [exp] 107 / 4e-28 AT5G48820 131 / 2e-37 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.009G103600 [exp] 64 / 2e-12 AT1G49620 92 / 6e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) Potri.004G142100 [exp] 62 / 1e-11 AT1G49620 91 / 7e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) Potri.007G042300 [exp] 50 / 2e-07 AT2G23430 / KIP-RELATED PROTEIN 1, Cyclin-dependent kinase inhibitor family protein (.1) Potri.005G137500 [exp] 48 / 2e-06 AT3G19150 50 / 2e-07 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02234 [flax] [poplar] CDI Cyclin-dependent kinase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10011862 pacid=23169232 polypeptide=Lus10011862 locus=Lus10011862.g ID=Lus10011862.BGIv1.0 annot-version=v1.0 ATGGGTAAGTACATGAAGAAGACCAAATCGGCGGTGGCCATGGAGCTCTCTTCCACCTCCTCCTCCACCGCCACCGTCGCCGCTGAAAGCTCCGGCGTCC GCACTCGCGCCAAAACCCTAGCTCTCCAGAAGCTCCAGCAACAACGGTCTCCTTCTCCGACGAAGATCGCTATTCCTCTTGCCGACGAATCGTCCTTGTC GTACCTCCAGCTCCGGAGCCGCCGCCTCGAGAAGCCCCCTCTCCGGAAGGAGGATTCCGACGAAATTAGTGGCTCCAGGAGAGGATTGATGAAGTGTAAA GCTCCGAGCTCCAGGCTGGCTAGAGTGAGCTCTGAGACTGTAAGGGAAGAAGGGAATCTGTTTGGTTCTAGTGGTGGTGGTGGTGAGGATGGCTCTTTTG GTGAGAACTACTGCTCTGACTTTGAAGCCAGAGACAGGAGCACCAGGGAGAGCACGCCGTGTAGTCTGGTAAAGCGCTCCGATGATGTCAGCGATGGGAC ACCTGGCTCGACAACGAGGCAAGGAGTGGTGGCTAGTAATCGTCGAGTTAGTAGTAACGAAACGTTGAGGAACTTCCCAACTGTGCAAGAAATGGACGAC TTCTTTGCCCGTGCAGAAGAACGACAGCAGAGACTGTTCATAGAGAAGTACAACTTTGACGTGGTGAATGATGTGCCCCTCCCAGGCCGCTACGAGTGGA TCCAAATAACTCCTTGA
AA sequence Show only first row Show all	>Lus10011862 pacid=23169232 polypeptide=Lus10011862 locus=Lus10011862.g ID=Lus10011862.BGIv1.0 annot-version=v1.0 MGKYMKKTKSAVAMELSSTSSSTATVAAESSGVRTRAKTLALQKLQQQRSPSPTKIAIPLADESSLSYLQLRSRRLEKPPLRKEDSDEISGSRRGLMKCK APSSRLARVSSETVREEGNLFGSSGGGGEDGSFGENYCSDFEARDRSTRESTPCSLVKRSDDVSDGTPGSTTRQGVVASNRRVSSNETLRNFPTVQEMDD FFARAEERQQRLFIEKYNFDVVNDVPLPGRYEWIQITP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10011862 [exp]	0	1
AT2G39870			unknown protein		Lus10004675 [exp]	1.0	0.9261
AT1G75060			unknown protein		Lus10028777 [exp]	2.4	0.9075
AT4G06599			ubiquitin family protein (.1)		Lus10001294 [exp]	4.8	0.8774
AT5G03970			F-box associated ubiquitinatio...		Lus10022006 [exp]	6.0	0.9036
AT1G48620		HON5	high mobility group A5 (.1)		Lus10028911 [exp]	6.6	0.8980
AT1G68400			leucine-rich repeat transmembr...		Lus10031965 [exp]	7.7	0.9156
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008927 [exp]	8.0	0.8729
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	8.4	0.8993
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10042643 [exp]	8.4	0.9016
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	8.5	0.9056

Compare expression of checked genes

Lus10011862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.