Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32700 807 / 0 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) AT4G32551 407 / 4e-128 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) AT2G41500 93 / 2e-19 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT4G02730 83 / 8e-17 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 80 / 8e-16 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 79 / 8e-15 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 77 / 4e-14 TAF5 TBP-associated factor 5 (.1) AT2G33340 76 / 6e-14 MAC3B MOS4-associated complex 3B (.1.2.3) AT2G21390 76 / 1e-13 Coatomer, alpha subunit (.1) AT5G16750 75 / 2e-13 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022797 [exp] 1292 / 0 AT2G32700 903 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10043135 [exp] 823 / 0 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10032614 [exp] 816 / 0 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10033066 [exp] 346 / 2e-105 AT4G32551 746 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10017754 [exp] 347 / 3e-105 AT4G32551 778 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10014674 [exp] 98 / 9e-22 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 97 / 1e-21 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 94 / 1e-19 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 88 / 1e-17 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241800 [exp] 1033 / 0 AT2G32700 899 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.001G049400 [exp] 839 / 0 AT2G32700 1057 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.003G178600 [exp] 817 / 0 AT2G32700 1051 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.018G033300 [exp] 380 / 2e-117 AT4G32551 657 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.006G248100 [exp] 375 / 3e-116 AT4G32551 996 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.004G045601 [exp] 328 / 3e-101 AT2G32700 354 / 1e-111 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.002G051900 [exp] 95 / 5e-21 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 91 / 2e-18 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.007G009500 [exp] 83 / 6e-17 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 81 / 4e-16 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0561 [flax] [poplar] LisH PF08513 [flax] [poplar] LisH LisH
Representative CDS sequence Show only first row Show all	>Lus10011863 pacid=23169262 polypeptide=Lus10011863 locus=Lus10011863.g ID=Lus10011863.BGIv1.0 annot-version=v1.0 ATGGCACAAAGCAATTGGGAAGCAGATAAGATGCTCGACGTGTATATTCATGATTACCTTTTGAAGCGGAAATTGCATAACTCTGCTAAGGCTTTCATGA CCGAAGGGAAGGTTGCTACAGACCCAGTAGCAATTGATGCACCCGGAGGTTTTCTATTTGAATGGTGGTCTGTGTTCTGGGACATCTTTATTGCGAGAAC AAATGAGAAGCATTCTGAAGCTGCTGCAGCTTATATAGAGGCACAGCATACAAAGGCAAGGGAGCAACAACAGCTGCAAATGCAACAATTGCAATTGTTG CAGCAAAGGAGTGCTCAACTGCAACGCCGGGATCCAAGTCATCCTGCTCTTGCTGGTTCTATAAGCGCTGCAAACTCTGAGGGAATAATTGGGCAGCCAT CAGCAAGTGTCTTGGCGATGAAATTATACGAAGAACGGATGAAACACCCTCATTCTATGGACTCGGACACATCGCCAGCGCTCCTTGATGGCAATAGGAT GGGTCTTGTCAAATCTGGAACCAATCATCAAGGTCAAATGGTACATGGTAATACAGGGAATGTGTCGTCTGCTTTGCAGCAAATCCAGCCACGAGCACCT CTAACCCCAGACATAAAACCTGAAATTAACTTGGGTCCTACTCAGAAAAGCTTACCAATGGATCCATCATCTATCTATGGGCAGGCAATATTGCACTCTA AATCTGGATTAGGAGTAAATCAAGGAGCAAGTGGTCTTCCATTGAAGGGTTGGCCTTTGACTGGAATTGACCAATTGCGTCCAAATTTGGGCATACAGAT GCAAAAAGCCAATATCCAGCCACAAAATCAGTATCTACTAGCTTCCCAACAACAGGTCCTTGCACAGGCTCAAGCACAAAGTAACCTTGGAAATTCAACT AATTATGGCGACATTGACCCTCGAAGGTTGAGTCAGCTACCACGAGGAAGCTTCAACCCAAAAGATGGCCAAGCGACAAGAAATGATGGACCAATGCAAT CAACCTCACCAAAGATAAAGATCGAGCCGTCTTCCTCTATACAGCAGAACCAATTGCAGCAGCAGCAGCCGACACAACAGCAAATACAGCAGAACAATAG GAAAAGAAAGCAAAACTCTTCCTCTGGACCTGCTAACAGCACTGGTACGGGAAACACAGTCGGTCCTCCTGGTTCTCCTCCATCAACTCATACTCCTGGT GATGGAATGGCCCCGAGTAATTTGCAACAGGTTAACAGTGCACCGAAAAACATGATGATGTATGGTCAAGAGGCAAGTGCGGGTCTTGTATCTTCCAATA TGCTGGATGACATTGAAAAGTTTGGAGATATTGCTTCTCTTGACGATAATATTGAACAGTTCCTGAACGGAGATGGGAGGGAATTGTATGGAGCTTTAAG ACAAAGCCCAAAAGAGCCTTCTAAAGGATTCACTTTTGGAGAGGTTGGTTGCATAAGGACCAGAAATAGCAAGGTCACTTGTTGTCACTTCTCTTCAGAT GGTAAACTTCTGGCAAGTGCCGGTCACGATAAAAAGGTTGTCCTGTGGAATATGGATACTCTGCAAACCCAGAGCACGCCCGAGGAGCACAAATATGTCA TCACTGATATCCGTTTCAGGCCCAATTCATCTCAGCTTGCAACATCATCAGTCGACAAGTCTGTTCGGTTGTGGGATGCTTCTGATCCAAGCTATTGCCT ACATGCCTGTACCGGCCACAACTCCCCCATCATGTCCCTAGATTTCCACCCAAAGAAAACAGATCTTTTCTGTTTTAGCGACAACGACAATGAAATTCGC TACTGGAATATCAATCCTTTCTCATGCACTCGTATATCCAAGGGAGGCAACGCCCAAGTGAGATTTCAACCAGGAATGGGCCAACTACTGGCTGCAGCTT CAGACAAAGTAGTGTCCATCTTCGATGTAGAAACAGACAGGCAAACACACTCATTTCAGGGTCACGAGGATATGGTAAACTACATTTCTTGGGATGCGAA TGGGGAGCTCCTCGCCTCGGTTAGCCAGAACTTGGTGAAAGTTTGGTCACTTGTCTCAGGGGACTGCATTCAGGAGTTCAACTCGAATGGGAACCATCTC CATTCATGCGTTTTCCATCCCAACTACCCATCTCTCCTGGTCATTGGTGGCATCTCTTCGCTGGAGCTGTGGAACATGGCGGAGAACAAGAGCATGACGA TTGCAGCACACGATAACATCGTGTCGGCACTAGCGCAGTCATCGGTCAACGGGATGGTGGCCTCTGCCAGTCACGACTGCTCCGTGAAGCTAGGGACTGA TGGCAAGGTGATTGGAGGAACCGGGGGTGGAGATCCGTGGTGTCATTACAGGCATGGAGTTGGCGTGGCGACTTGGCATTCGGAGATTGGAAGTCCAAGT GACCAAGTGGACTCGAAAAGTGTGGTGAATGTGCTGATTAGTGGCACTGCCCTCGGCAACCATCATGCTAGCTTGTTGGTTAGATTCCAGAGACTCCAGA AGAGAGACCGGGAGATTCTACTTTTTCATATCTACCGCAATGCTAATTGCTTTGCCGATCACATGGCTGCGAGAGGCCATAACGTTCAAATGGGAGTATG CGGAGCTTGA
AA sequence Show only first row Show all	>Lus10011863 pacid=23169262 polypeptide=Lus10011863 locus=Lus10011863.g ID=Lus10011863.BGIv1.0 annot-version=v1.0 MAQSNWEADKMLDVYIHDYLLKRKLHNSAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEAAAAYIEAQHTKAREQQQLQMQQLQLL QQRSAQLQRRDPSHPALAGSISAANSEGIIGQPSASVLAMKLYEERMKHPHSMDSDTSPALLDGNRMGLVKSGTNHQGQMVHGNTGNVSSALQQIQPRAP LTPDIKPEINLGPTQKSLPMDPSSIYGQAILHSKSGLGVNQGASGLPLKGWPLTGIDQLRPNLGIQMQKANIQPQNQYLLASQQQVLAQAQAQSNLGNST NYGDIDPRRLSQLPRGSFNPKDGQATRNDGPMQSTSPKIKIEPSSSIQQNQLQQQQPTQQQIQQNNRKRKQNSSSGPANSTGTGNTVGPPGSPPSTHTPG DGMAPSNLQQVNSAPKNMMMYGQEASAGLVSSNMLDDIEKFGDIASLDDNIEQFLNGDGRELYGALRQSPKEPSKGFTFGEVGCIRTRNSKVTCCHFSSD GKLLASAGHDKKVVLWNMDTLQTQSTPEEHKYVITDIRFRPNSSQLATSSVDKSVRLWDASDPSYCLHACTGHNSPIMSLDFHPKKTDLFCFSDNDNEIR YWNINPFSCTRISKGGNAQVRFQPGMGQLLAAASDKVVSIFDVETDRQTHSFQGHEDMVNYISWDANGELLASVSQNLVKVWSLVSGDCIQEFNSNGNHL HSCVFHPNYPSLLVIGGISSLELWNMAENKSMTIAAHDNIVSALAQSSVNGMVASASHDCSVKLGTDGKVIGGTGGGDPWCHYRHGVGVATWHSEIGSPS DQVDSKSVVNVLISGTALGNHHASLLVRFQRLQKRDREILLFHIYRNANCFADHMAARGHNVQMGVCGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10011863 [exp]	0	1
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10022797 [exp]	1.0	0.9524
AT1G71900			Protein of unknown function (D...		Lus10019952 [exp]	2.0	0.8597
AT3G07400			lipase class 3 family protein ...		Lus10009590 [exp]	2.4	0.8851
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	2.8	0.9007
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10012781 [exp]	3.7	0.8440
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10015893 [exp]	7.1	0.8344
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10036812 [exp]	8.0	0.8148
AT3G24630			unknown protein		Lus10011100 [exp]	8.1	0.8447
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Lus10017641 [exp]	10.1	0.8579
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015325 [exp]	10.4	0.8532

Compare expression of checked genes

Lus10011863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.