Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26055 67 / 4e-16 unknown protein AT5G57080 56 / 6e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001708 [exp] 139 / 2e-44 AT4G26055 73 / 1e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G204200 [exp] 72 / 3e-18 AT4G26055 76 / 1e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011865 pacid=23169242 polypeptide=Lus10011865 locus=Lus10011865.g ID=Lus10011865.BGIv1.0 annot-version=v1.0 ATGAACAAGAAGTTTGGAGCAGGGAAGCCGCCAACGGGGACTCCTTCACTTGGTTGGTCATGCGTTGTCGTCATTATTTCCCTTCTCTCCGGCGCCTCTA TTGTCCACAATATCAACAAACCTGATCTTGTAAGCTCTTTTTTCTCCATTATGGCTTCTGCTTTGTCTTTTGGTACAAGCAATTGCTTCCATGAAATGCT CGACTGTCTGAAAACTTTCCTGAATCATGCTTGGATCATGCAGAGGTTGGCTGCGGTGGAGAATGTCGACACTGGCGATAAGAATGAAGTCCCGGCCCAG AAACACTGA
AA sequence Show only first row Show all	>Lus10011865 pacid=23169242 polypeptide=Lus10011865 locus=Lus10011865.g ID=Lus10011865.BGIv1.0 annot-version=v1.0 MNKKFGAGKPPTGTPSLGWSCVVVIISLLSGASIVHNINKPDLVSSFFSIMASALSFGTSNCFHEMLDCLKTFLNHAWIMQRLAAVENVDTGDKNEVPAQ KH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26055			unknown protein		Lus10011865 [exp]	0	1
AT4G26055			unknown protein		Lus10001708 [exp]	1.0	0.6952
AT5G61310			Cytochrome c oxidase subunit V...		Lus10040012 [exp]	6.2	0.6874
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10025569 [exp]	11.4	0.6810
AT2G29640		JOSL	JOSEPHIN-like protein (.1)		Lus10018214 [exp]	17.4	0.6447
AT5G04000			unknown protein		Lus10042034 [exp]	20.5	0.6794
AT2G33585			unknown protein		Lus10016044 [exp]	20.9	0.6130
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019502 [exp]	22.0	0.6460
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10033806 [exp]	27.9	0.6722
AT2G21290			unknown protein		Lus10018053 [exp]	30.9	0.6585
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10037505 [exp]	34.9	0.6429

Compare expression of checked genes

Lus10011865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.