Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07070 550 / 0 Protein kinase superfamily protein (.1) AT3G24790 522 / 0 Protein kinase superfamily protein (.1) AT5G18610 492 / 3e-172 Protein kinase superfamily protein (.1.2) AT4G13190 487 / 3e-172 Protein kinase superfamily protein (.1) AT5G13160 482 / 3e-169 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 468 / 1e-164 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G20530 464 / 4e-163 Protein kinase superfamily protein (.1) AT3G02810 447 / 6e-154 Protein kinase superfamily protein (.1) AT5G16500 448 / 2e-153 Protein kinase superfamily protein (.1) AT1G61860 439 / 2e-153 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022799 [exp] 668 / 0 AT3G07070 487 / 2e-171 Protein kinase superfamily protein (.1) Lus10033966 [exp] 494 / 4e-173 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 489 / 2e-171 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 484 / 6e-171 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 485 / 3e-170 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10040350 [exp] 483 / 3e-170 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 480 / 2e-169 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040050 [exp] 476 / 1e-167 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10043050 [exp] 475 / 2e-167 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241600 [exp] 569 / 0 AT3G07070 543 / 0.0 Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 496 / 5e-174 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 493 / 7e-173 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 491 / 7e-173 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 486 / 4e-172 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G421400 [exp] 486 / 8e-172 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 483 / 7e-171 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 479 / 5e-168 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 472 / 2e-166 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 470 / 3e-165 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10011866 pacid=23169221 polypeptide=Lus10011866 locus=Lus10011866.g ID=Lus10011866.BGIv1.0 annot-version=v1.0 ATGAGTTGCTTCGCTTGCTTTTCATCATCATCTCATGATAAGAAATCCGCCAGGCGGAACGCCAAGCAACCAAATTCGCCTCCCGTCAAGGAAAACCAGG TCGCCCAGCAACCTCGCTCCGCGAATCCGAATCCTGAAGGGTACAAGACCGAAACGGCGTCGTCGTCTCCGAACAATATAGCTGCGGAGACGTTCACGTT CAGGGAGCTTGCGACGGCGACGAAGAACTTCAGGCAGGAATGTCTGATCGGAGAAGGCGGGTTCGGGAGAGTTTACAAGGGACGTCTCGACAGAACTAAC CAGGTTGTGGCTGTGAAGCAACTTGACAGGAATGGAATGCAAGGGAACAGGGAGTTCCTGGTGGAGGTGTTGATGCTGAGCCTGTTGCATCACCGTAATT TGGTGAATCTGATTGGGTATTGTGCTGATGGTGATCAGAGGCTGTTGGTTTACGAGTACATGTGCAAAGGCTCCCTTGAAGATCATCTTCTAGATCTCCC GCCGGGGAGGAAGTCACTGGATTGGTTCACGAGGATGAAGATAGCATTGGGTGCGGCAAAAGGGTTGGAGTATCTGCACGACAAGGCGAATCAACCGGTG ATATACCGGGACCTGAAGTCGTCGAACATTCTCCTCGACGCAGAATTCACGGCCAAACTCTCCGACTTCGGCCTGGCTAAGCTGGGACCCACCGGAGACA AGACACACGTCTCGTCCAGGGTGATGGGTACGTACGGATACTGCGCGCCGGAGTACCAGAGGACCGGCCAGCTGACCGTTAAATCCGACGTCTACAGCTT CGGAGTCGTTCTCTTGGAATTGATCTCCGGCAGAAGAGTCATCGACACCAGTCGGCCTTCCCACCAGCAGAATCTAGTCACTTGGGCACAGCCGTTGTTC AAGGACCCGAGCGGTTACCGGGAGCTGGCGGATCCACTTCTGAAGGGCGATTTCCCCGTGAGGGGGTTAAATCAGGCCGTGGCTGTGTCTGCAATGTGTC TGCAGGAGGACGCAGCCGTCCGGCCGCTGATGACCGACGTCGTGAGCGCCCTTAGCTTCTTGGGGAAGCCGGCTGATGTTTTGCCGGCTTCTGTGCCGGG AGAAAAAAACAGCGACAGCGGAGAGATCATGAAGAAGAAGGAGATGGAGGATGAGGAGAACGCTCAAGAGCGGAAGAGAGCGGTGGCGGAGGCGATTGAG TGGGGAGCTAATTCGAGGCAAGTTGCGGCGGCGCAGGGCGGAGCTGCTTCTTCTCAAATTTGA
AA sequence Show only first row Show all	>Lus10011866 pacid=23169221 polypeptide=Lus10011866 locus=Lus10011866.g ID=Lus10011866.BGIv1.0 annot-version=v1.0 MSCFACFSSSSHDKKSARRNAKQPNSPPVKENQVAQQPRSANPNPEGYKTETASSSPNNIAAETFTFRELATATKNFRQECLIGEGGFGRVYKGRLDRTN QVVAVKQLDRNGMQGNREFLVEVLMLSLLHHRNLVNLIGYCADGDQRLLVYEYMCKGSLEDHLLDLPPGRKSLDWFTRMKIALGAAKGLEYLHDKANQPV IYRDLKSSNILLDAEFTAKLSDFGLAKLGPTGDKTHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELISGRRVIDTSRPSHQQNLVTWAQPLF KDPSGYRELADPLLKGDFPVRGLNQAVAVSAMCLQEDAAVRPLMTDVVSALSFLGKPADVLPASVPGEKNSDSGEIMKKKEMEDEENAQERKRAVAEAIE WGANSRQVAAAQGGAASSQI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07070			Protein kinase superfamily pro...		Lus10011866 [exp]	0	1
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10031958 [exp]	2.4	0.9629
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	2.8	0.9703
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	4.0	0.9703
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	4.9	0.9703
					Lus10025748 [exp]	4.9	0.8782
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10039329 [exp]	5.7	0.9703
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10019853 [exp]	6.3	0.9703
					Lus10001533 [exp]	7.1	0.9553
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	7.5	0.9600
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10009794 [exp]	8.0	0.9568

Compare expression of checked genes

Lus10011866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.