Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24770 37 / 0.0004 CLE41 CLAVATA3/ESR-RELATED 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022802 [exp] 74 / 4e-18 ND 38 / 2e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241300 [exp] 52 / 2e-09 AT3G24770 52 / 1e-09 CLAVATA3/ESR-RELATED 41 (.1) Potri.012G019400 [exp] 49 / 3e-08 AT3G24770 54 / 2e-10 CLAVATA3/ESR-RELATED 41 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011868 pacid=23169256 polypeptide=Lus10011868 locus=Lus10011868.g ID=Lus10011868.BGIv1.0 annot-version=v1.0 ATGGATATTGAACCCTTGTGGCAACTTGGGGGGTGGCCGTTTCTTCTTTCTTCTTCTCCGACTCCGTCCTCCGATTGCATGGCAACAATCTCGAAACCTC CTCCTCCTCATCGTCGTGGTGGTCGAAACCTCGTCTCCCTCTCCTTCCTCCTCTTCCTCTTCCTCTTCCTCCTCCTCCTCCTATTCACACCTTCAACTCC AACAACACAACCCTCTCCGATTTCGGTCAAGAGGGTACTTTCGGAATCCTCCACCACAACAACTTTACACCCTAAACAAACGAAAGGAAAGCACGACTCC AAGTCGAAATCGAAGAGATCGGACTACTTTGGAGCCGATGAGCACGAGGTTCCCAGCGGTCCGAACCCCATCTCCAACTAG
AA sequence Show only first row Show all	>Lus10011868 pacid=23169256 polypeptide=Lus10011868 locus=Lus10011868.g ID=Lus10011868.BGIv1.0 annot-version=v1.0 MDIEPLWQLGGWPFLLSSSPTPSSDCMATISKPPPPHRRGGRNLVSLSFLLFLFLFLLLLLFTPSTPTTQPSPISVKRVLSESSTTTTLHPKQTKGKHDS KSKSKRSDYFGADEHEVPSGPNPISN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Lus10011868 [exp]	0	1
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	1.0	0.9538
					Lus10022802 [exp]	2.2	0.9340
					Lus10028522 [exp]	2.4	0.9321
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10041721 [exp]	3.5	0.9184
AT3G16330			unknown protein		Lus10038274 [exp]	3.7	0.9395
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10000802 [exp]	4.5	0.9191
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032585 [exp]	5.1	0.9146
AT5G63710			Leucine-rich repeat protein ki...		Lus10025703 [exp]	5.7	0.9360
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10020814 [exp]	5.9	0.9284
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042433 [exp]	7.7	0.8977

Compare expression of checked genes

Lus10011868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.