Plant FIBer expression Database

Lus10011869 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G13200 87 / 1e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022803
[exp]
207 / 8e-69 AT4G13200 118 / 6e-34 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G241000
[exp]
76 / 4e-17 AT4G13200 88 / 1e-21 unknown protein
PFAM info
Representative CDS sequence
>Lus10011869 pacid=23169252 polypeptide=Lus10011869 locus=Lus10011869.g ID=Lus10011869.BGIv1.0 annot-version=v1.0
ATGAATCTTGCTCCGTCTTTTTCCCCGCAACTACTCACCCCCTTTCCGCCTCAGTCGAATCCGCGCTTCAAACCAACCGCCGCCGCCGCCGCCGCAATAA
TCCCACAGAACCGCCGCCGGCTCTCTTGCTCGCCGGTGGCCAGAACAGTAATCAATAATACCCAGCTCACCCAAAGCTTTCGAGAGCTCCGCAGAGCTAG
CATCGTGTACAGCAGCAGTAGCCCCAATTCAACCGATTCAACTTCAGGAGAGAATGAGAGCAAGAGTGTGTTGGATGCATTCTTCCTGGGGAAGGCTTTG
GCAGAAGTACTGAACGAGAGGATTGAATCTGCAGTAGGGGAGGTTCTGAGTACTATTGGAAAGCTCCAATCTGAGCAGCAGAAGCAAATCCAAAGCTTCC
AGGAAGATGTGGTTGAAAGAGCCAAGAGGGCCAAGCAAGGAGCAGCACAGACTACATCAGTAGTAGAAACATCAGCATCAGCATCAACAACTGATGAGGC
TGAAGAAACTGAAACCAGCACAGTTGTATAA
AA sequence
>Lus10011869 pacid=23169252 polypeptide=Lus10011869 locus=Lus10011869.g ID=Lus10011869.BGIv1.0 annot-version=v1.0
MNLAPSFSPQLLTPFPPQSNPRFKPTAAAAAAIIPQNRRRLSCSPVARTVINNTQLTQSFRELRRASIVYSSSSPNSTDSTSGENESKSVLDAFFLGKAL
AEVLNERIESAVGEVLSTIGKLQSEQQKQIQSFQEDVVERAKRAKQGAAQTTSVVETSASASTTDEAEETETSTVV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G13200 unknown protein Lus10011869
[exp]
0 1
AT2G34450 HMG-box (high mobility group) ... Lus10025391
[exp]
1.0 0.8650
AT4G13200 unknown protein Lus10022803
[exp]
4.6 0.8258
AT1G27760 SAT32, ATSAT32 SALT-TOLERANCE 32, interferon-... Lus10025970
[exp]
7.6 0.7694
AT5G43980 PDLP1, PDLP1A PLASMODESMATA-LOCATED PROTEIN ... Lus10001052
[exp]
9.8 0.8222
AT5G23140 NCLPP7, NCLPP2,... nuclear-encoded CLP protease P... Lus10040982
[exp]
9.9 0.8126
AT3G29090 PME31, ATPME31 A. THALIANA PECTIN METHYLESTER... Lus10014338
[exp]
12.2 0.8122
AT5G20700 Protein of unknown function (D... Lus10022948
[exp]
12.3 0.7836
AT3G51030 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOX... Lus10028349
[exp]
12.8 0.8641
AT3G01910 AT-SO, ATSO, SO... sulfite oxidase (.1.2.3) Lus10041561
[exp]
13.5 0.7947
AT3G17980 AtC2 Arabidopsis thaliana C2 domain... Lus10001594
[exp]
14.1 0.8085

Lus10011869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.