Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33120 367 / 8e-131 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT2G32670 362 / 8e-128 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT1G04750 357 / 8e-127 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT1G04760 355 / 5e-126 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT4G15780 306 / 1e-106 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT2G33110 284 / 6e-98 ATVAMP723 vesicle-associated membrane protein 723 (.1) AT3G54300 276 / 1e-94 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT5G11150 159 / 1e-48 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT4G32150 157 / 4e-48 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT5G22360 153 / 2e-46 ATVAMP714 vesicle-associated membrane protein 714 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022804 [exp] 400 / 8e-144 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 386 / 3e-138 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 383 / 7e-137 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 352 / 6e-125 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 349 / 1e-123 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 348 / 2e-123 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 347 / 6e-123 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1) Lus10000754 [exp] 342 / 6e-121 AT1G04760 372 / 8e-133 vesicle-associated membrane protein 726 (.1) Lus10011737 [exp] 294 / 3e-102 AT1G04760 324 / 4e-114 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G177700 [exp] 375 / 4e-134 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.001G050400 [exp] 367 / 8e-131 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.002G240900 [exp] 354 / 1e-125 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 349 / 9e-124 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.012G119600 [exp] 349 / 9e-124 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.008G209100 [exp] 300 / 3e-104 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.008G019400 [exp] 272 / 6e-93 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.010G239900 [exp] 269 / 7e-92 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.009G018900 [exp] 155 / 3e-47 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.018G025800 [exp] 152 / 3e-46 AT4G32150 366 / 2e-130 vesicle-associated membrane protein 711 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10011870 pacid=23169213 polypeptide=Lus10011870 locus=Lus10011870.g ID=Lus10011870.BGIv1.0 annot-version=v1.0 ATGGGTCAGCAATTGTTGATCTACAGCTTCGTGGCTCGCGGGACGGTGATCCTTGCCGAGTTTACGGAGTTCACCGGCAACTTCACCAGCATAGCTGCTC AGTGCCTCCAGAAACTCCCCGCTTCCAACAACAAGTTCACTTACAATTGCGATGGCCACACCTTCAACTACCTAGTCGAAGAAGGCTTCACTTATTGCGT GGTAGCCGTGGAGTCTGTTGGGCGTCAGGTTCCTATTGCTTTCCTCGAACGGGTCAAAGAAGACTTTGCTAAGAAATACAGTGGAGGAAAAGCTGCAACA GCTGTTGCCCAGAGCTTGAACAAGGAATTCGGTCCCAAGTTGAAGGAGCAGATGCAATACTGCGTGGATCACCCCGAGGAGGTTAGCAAGCTTGCTAAGG TGAAAGCTCAGGTCTCTGAAGTGAAAGGAGTTATGATGGACAACATAGAGAAGGTTCTTGATCGCGGAGAGAAAATCGAGCTCCTCGTGGACAAAACAGA AAACCTTAGGTCTCAGGCACAAGATTTCAGGCAGCAGGGGACGAAGATGAGGAGAAAGATGTGGTTCCAGAACATGAAGATCAAGCTGATAGTACTGGGA ATCATAATCGCGCTGATCCTCATCATCGTATTATCGATCTGCGGAGGCTTCAATTGTAACAAGTAA
AA sequence Show only first row Show all	>Lus10011870 pacid=23169213 polypeptide=Lus10011870 locus=Lus10011870.g ID=Lus10011870.BGIv1.0 annot-version=v1.0 MGQQLLIYSFVARGTVILAEFTEFTGNFTSIAAQCLQKLPASNNKFTYNCDGHTFNYLVEEGFTYCVVAVESVGRQVPIAFLERVKEDFAKKYSGGKAAT AVAQSLNKEFGPKLKEQMQYCVDHPEEVSKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWFQNMKIKLIVLG IIIALILIIVLSICGGFNCNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10011870 [exp]	0	1
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008540 [exp]	5.4	0.8941
AT3G09010			Protein kinase superfamily pro...		Lus10011193 [exp]	5.5	0.8737
AT4G35220			Cyclase family protein (.1)		Lus10019822 [exp]	5.5	0.8715
AT1G30090			Galactose oxidase/kelch repeat...		Lus10028121 [exp]	6.6	0.8795
AT4G13270			Late embryogenesis abundant (L...		Lus10043216 [exp]	13.2	0.8291
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10029278 [exp]	16.7	0.8534
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016920 [exp]	18.0	0.8744
AT5G17570			TatD related DNase (.1)		Lus10021077 [exp]	19.1	0.8076
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	20.3	0.8718
AT5G16200			50S ribosomal protein-related ...		Lus10009148 [exp]	24.0	0.8508

Compare expression of checked genes

Lus10011870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.