Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48850 386 / 6e-136 ATSDI1 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04770 348 / 1e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G51280 293 / 3e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20900 233 / 1e-73 TDM1, MS5 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44330 215 / 1e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G22794 95 / 4e-23 unknown protein AT1G49940 46 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022806 [exp] 553 / 0 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10000753 [exp] 380 / 2e-133 AT1G04770 391 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011738 [exp] 379 / 7e-133 AT1G04770 389 / 1e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028433 [exp] 285 / 2e-93 AT3G51280 569 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028434 [exp] 284 / 2e-93 AT3G51280 560 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041887 [exp] 284 / 3e-93 AT3G51280 572 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041886 [exp] 284 / 4e-93 AT3G51280 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023256 [exp] 253 / 1e-80 AT4G20900 330 / 4e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008852 [exp] 245 / 1e-77 AT4G20900 311 / 7e-101 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G240700 [exp] 464 / 7e-167 AT5G48850 404 / 9e-143 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G177600 [exp] 402 / 2e-142 AT1G04770 384 / 8e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G050600 [exp] 386 / 6e-136 AT1G04770 381 / 6e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G056500 [exp] 290 / 2e-95 AT3G51280 603 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G112100 [exp] 286 / 3e-94 AT3G51280 595 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G163500 [exp] 263 / 6e-83 AT4G20900 328 / 1e-105 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G465401 [exp] 258 / 6e-81 AT4G20900 337 / 1e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G033201 [exp] 47 / 7e-07 AT1G04770 53 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011872 pacid=23169249 polypeptide=Lus10011872 locus=Lus10011872.g ID=Lus10011872.BGIv1.0 annot-version=v1.0 ATGGGGACTACTAGCAAGGATGAACTGTTTCATGTGATTCACAAGGTTCCTTCTGGTGATGGCCCTTATGTCAAAGCCAAGCATGCTCAGTTGGTGGATA AGGATGCTGAGGCAGCAATAGTATGGTTTTGGAAGGCAATAAACGCAGGAGATCGAGTAGACAGTGCACTCAAAGACATGGCCGTCGTCATGAGGCAACT CAACCGAAGTGAGGAAGCCATTGAAGCCATCAAGTCCTTCCGACGACGCTGCTCGAAGCAGGCTCAGGACTCCCTCGACAATGTCCTCATCGACTTGTAC AAGAAATGTGGGAAGGTGGATGAACAAGTAGACCTTCTGAAGAGGAAGCTGAGATTAATATACTTGGGAGAGACCTTCAATGGCAGACCCACCAAAACTG CTCGATCTCATGGCAAGAAATTCCAGGTTTCTGTTCAGCAAGAGACCTCCCGATTACTTGGAAACTTGGGATGGGCTTACATGCAGAAGCCCAACTACAT AGCAGCGGAGGTGGTGTACAAGAAGGCTCAAATGATAGATCCAGACGCCAATAAGGCCTGCAATTTGGGCCTTTGCTTGATAAAGCAGGCCCGGTATGAT GAGGCCCATTCAGTTCTGGAAGAAGTCTCTCAGTGTAGGCTCCCTGGCTCAGACGACATTCGGGCGAGGAATCGCGCTGACGAGTTGATCGGAGAGATCA GACTACGGCAGTTGCCACAAGATACGATGGGCCTGATGGGCTTGGACCTTGACGATGAAGATTTCATGAATGGGCTTGAGGAGTTCATGAGAAAGTGGGC CGGGTCAAGGTCCAAGAGGCTACCCATCTTTGAAGAGATCTCTTCGTTCAGAGACCAATTAGCATGTTGA
AA sequence Show only first row Show all	>Lus10011872 pacid=23169249 polypeptide=Lus10011872 locus=Lus10011872.g ID=Lus10011872.BGIv1.0 annot-version=v1.0 MGTTSKDELFHVIHKVPSGDGPYVKAKHAQLVDKDAEAAIVWFWKAINAGDRVDSALKDMAVVMRQLNRSEEAIEAIKSFRRRCSKQAQDSLDNVLIDLY KKCGKVDEQVDLLKRKLRLIYLGETFNGRPTKTARSHGKKFQVSVQQETSRLLGNLGWAYMQKPNYIAAEVVYKKAQMIDPDANKACNLGLCLIKQARYD EAHSVLEEVSQCRLPGSDDIRARNRADELIGEIRLRQLPQDTMGLMGLDLDDEDFMNGLEEFMRKWAGSRSKRLPIFEEISSFRDQLAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48850		ATSDI1	SULPHUR DEFICIENCY-INDUCED 1, ...		Lus10011872 [exp]	0	1
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10007404 [exp]	1.7	0.8513
AT5G16970		AT-AER	alkenal reductase (.1)		Lus10035274 [exp]	4.7	0.8867
AT4G24130			Protein of unknown function, D...		Lus10001674 [exp]	6.3	0.8727
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10006669 [exp]	9.9	0.8270
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10000612 [exp]	10.5	0.7581
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005740 [exp]	11.0	0.8181
					Lus10002344 [exp]	12.0	0.8185
AT4G25590		ADF7	actin depolymerizing factor 7 ...		Lus10014977 [exp]	13.4	0.7947
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10041111 [exp]	13.9	0.8370
					Lus10016931 [exp]	15.3	0.7840

Compare expression of checked genes

Lus10011872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.