Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05740 557 / 0 ATEGY2 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) AT5G35220 136 / 3e-34 EGY1 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) AT1G17870 72 / 6e-13 ATEGY3 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1) AT5G35210 65 / 8e-11 metalloendopeptidases;zinc ion binding;DNA binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022806 [exp] 868 / 0 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10005688 [exp] 125 / 2e-30 AT5G35220 776 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) Lus10020304 [exp] 124 / 5e-30 AT5G35220 781 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) Lus10006140 [exp] 74 / 1e-13 AT1G17870 801 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G066500 [exp] 613 / 0 AT5G05740 610 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Potri.013G064700 [exp] 139 / 3e-35 AT5G35220 766 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) Potri.001G289700 [exp] 84 / 6e-17 AT1G17870 755 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF02163 [flax] [poplar] Peptidase_M50 Peptidase family M50
Representative CDS sequence Show only first row Show all	>Lus10011873 pacid=23169264 polypeptide=Lus10011873 locus=Lus10011873.g ID=Lus10011873.BGIv1.0 annot-version=v1.0 ATGAGCAGCACTTCGACTATCTTTCGCGGCAGTTGTTGTCCATTGTTGCTATACTCGCCGCCCGGTAGCACTTCTTGTTCATATGATCTTCGTTCTCTGC CATTGCCAGATACATTCCGTACTTCCTGCCGACTGAGACGTTTTCTCGGTTTTCCGTCAGGAATTAATGAGATAATCCGTTACATTGAATCCAGATTTCA TGGGAAGAAAAGAAGGATAGTTTGTAGAGCTACGGAGACTGAACGTGATAACAATGACGATAAGGAGAATGATGCACACGAAGCAAGCGAGGCAGAGGCA GCACCTAGAGTAGATTCATTAGAACAACAAGATCCCCAGCCAGATTCTCCGCCTACAGTGTTGATGAACCAAGTTACCACTGTCGATGGGGAAACTAAAG CTGAAGGTGGAACCGGGGATGCTGAGGAAGTAGAAGTTGCTTCGGGGTCCCCTCTCCCGGGAATGAAGCTGCAACAGCTGGATGAATCATTTAGGATTCC AAAGGAAACAATTGACATCCTCAAGGACCAAGTGTTTGGGTTTGATACTTTCTTCGTCACAAGTCAGGAGCCCTATCAGGGTGGAGTCTTGTTCAAAGGA AATCTCCGTGGGCAAGCTGCAAAAAGCTATGATAAAATCGCTAACAGATTGAAGAATAAATTTGGCAATGAATACAAGGTTTTCCTTCTCACTAACCCAG AGGATGATAAACCAGTTGCAGTAGTTGTTCCAAGCAAGACTATGCAACCAGAGACAACACCCGTTCCTGAGTGGTTTGCAGCAGGGGCTTTTGGACTGGT CGCAGTTGTTACGCTACTTCTTAGAAATGTGCCCCAACTGCAGTCCAACTTACTATCAACCTTTGAAAATCCTGAATTGATATATAATGGCCTTCCTGGA GCTCTTGTCACTGCACTTGTTCTCGGGGTACATGAGCTTGGCCACATATTGGTTGCTAAAGATATTGGGATTAAGCTTGGAGTTCCATACTTTGTTCCAA GTTGGCAGATAGGCTCCTTTGGTGCTATCACAAGGATAAGGAACATTGTAGCGAAACGTGAAGATCTTCTGAAGGTTGCGGCTGCTGGCCCTCTAGCAGG CTTTTCCTTGGGTCTTGTTCTTCTTCTGATGGGATTCTTCTTACCATCCAGTGATGGAATTGGTATCATTGTGGATCCTGCCGTGTTTCACGAATCATTT CTTGCCGGTGGTACGGCGAAGCTGCTACTAGGAGATGCACTCAAGGAAGGGACTCCAATATCCATCAACCCGCTCGTGATATGGGCATGGTCTGGCCTTC TAATAAACGCCATCAATAGCATCCCTGCTGGAGAACTCGACGGAGGAAGAATCTCTTTCGCCATATGGGGAAGAAAGATCTCGTCTCGATTAACGGGTGC CTCTGTCGTCCTACTGGGGCTATCGTCGTTGTTTAACGACATCGCCTTCTACTGGGTTGTTCTGATATTCTTCTTGCAGAGGGGACCGATTGCTCCGATC TCGGAAGAGGTATCGGAGCCCGAGGACAAGTACATTTACCTTGGAGTATTGGTTTTGATGTTGGGGCTGTTAGTATGCTTACCTTACCCATTTCCTTTTA AAGATGAAGTCACGACAAGCTTCTTGTGA
AA sequence Show only first row Show all	>Lus10011873 pacid=23169264 polypeptide=Lus10011873 locus=Lus10011873.g ID=Lus10011873.BGIv1.0 annot-version=v1.0 MSSTSTIFRGSCCPLLLYSPPGSTSCSYDLRSLPLPDTFRTSCRLRRFLGFPSGINEIIRYIESRFHGKKRRIVCRATETERDNNDDKENDAHEASEAEA APRVDSLEQQDPQPDSPPTVLMNQVTTVDGETKAEGGTGDAEEVEVASGSPLPGMKLQQLDESFRIPKETIDILKDQVFGFDTFFVTSQEPYQGGVLFKG NLRGQAAKSYDKIANRLKNKFGNEYKVFLLTNPEDDKPVAVVVPSKTMQPETTPVPEWFAAGAFGLVAVVTLLLRNVPQLQSNLLSTFENPELIYNGLPG ALVTALVLGVHELGHILVAKDIGIKLGVPYFVPSWQIGSFGAITRIRNIVAKREDLLKVAAAGPLAGFSLGLVLLLMGFFLPSSDGIGIIVDPAVFHESF LAGGTAKLLLGDALKEGTPISINPLVIWAWSGLLINAINSIPAGELDGGRISFAIWGRKISSRLTGASVVLLGLSSLFNDIAFYWVVLIFFLQRGPIAPI SEEVSEPEDKYIYLGVLVLMLGLLVCLPYPFPFKDEVTTSFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05740		ATEGY2	ethylene-dependent gravitropis...		Lus10011873 [exp]	0	1
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10011108 [exp]	14.5	0.8470
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031298 [exp]	18.1	0.8304
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	20.6	0.8382
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10015552 [exp]	21.2	0.8405
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10043229 [exp]	32.5	0.8365
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	35.6	0.8362
AT4G28740			unknown protein		Lus10022845 [exp]	37.1	0.8099
AT5G42310			Pentatricopeptide repeat (PPR-...		Lus10016009 [exp]	44.2	0.8125
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	46.7	0.8287
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10038031 [exp]	50.5	0.8205

Compare expression of checked genes

Lus10011873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.