Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07030 208 / 1e-61 Alba DNA/RNA-binding protein (.1) AT1G76010 169 / 1e-47 Alba DNA/RNA-binding protein (.1) AT1G20220 161 / 5e-45 Alba DNA/RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022807 [exp] 274 / 5e-87 AT3G07030 241 / 4e-76 Alba DNA/RNA-binding protein (.1) Lus10017255 [exp] 176 / 4e-51 AT1G76010 251 / 2e-82 Alba DNA/RNA-binding protein (.1) Lus10005615 [exp] 174 / 2e-50 AT1G76010 264 / 3e-87 Alba DNA/RNA-binding protein (.1) Lus10034549 [exp] 176 / 4e-50 AT1G76010 276 / 5e-91 Alba DNA/RNA-binding protein (.1) Lus10021844 [exp] 175 / 8e-50 AT1G76010 280 / 1e-92 Alba DNA/RNA-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G240601 [exp] 236 / 1e-73 AT3G07030 199 / 3e-61 Alba DNA/RNA-binding protein (.1) Potri.002G066100 [exp] 179 / 5e-52 AT1G20220 200 / 1e-62 Alba DNA/RNA-binding protein (.1) Potri.005G194600 [exp] 175 / 7e-51 AT1G20220 194 / 6e-61 Alba DNA/RNA-binding protein (.1) Potri.005G244300 [exp] 172 / 5e-50 AT1G76010 221 / 7e-71 Alba DNA/RNA-binding protein (.1) Potri.002G017600 [exp] 168 / 5e-48 AT1G76010 216 / 3e-68 Alba DNA/RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0441 [flax] [poplar] AlbA PF01918 [flax] [poplar] Alba Alba
Representative CDS sequence Show only first row Show all	>Lus10011874 pacid=23169223 polypeptide=Lus10011874 locus=Lus10011874.g ID=Lus10011874.BGIv1.0 annot-version=v1.0 ATGGATAGGTACACCAGAGTCGAGAAGCCGAAGCCGGAGTCGCAGATAAACGAGAACGAGATCCGAATCACCTCCTCCGGTCCAGTCAGAAACTACATCA GCTACGCCACTTCCCTTCTCCAGGACAAACATGCAAAGGAGATTGTCTTGAAGGCGATGGGGCAGGCAATTAGCAAGACAGTTTCTATTGCTGAGAGCAT AAAGAGAAGAAATCCCCGCTTGCATCAAGATACTAGCATAAGCTCAGTTAGCATCACTGATGTCTGGGAACCTATTGAGGAAGGACTTGTACCTGTGGAA CAGACCAGACAAGTTTCCATGATCACAATTACCTTATCATTTAGTGAGCTAGATAAGAACTCTCCTGGGTATCAAGCCCCACAAGCTGAGGAACAATCAA AACCACAATATCAGCAGCAACAACAGTATAGACAAGTCCGAGGTCCATATTATGAAGATTCATATGGCGGCGGTCGCGGACATGGTGGCAGAGGGAGAGG GAGGGGAAGAGGTCGAAACTGGGGCAGGGGTGGATATGGATATGGAAACTATCAGGAAAACTATCAAGGAAACTATCAGGGAAACTATCAGAGGGGTTAT GAAGAGAATGGTGGTTATTCAAACTGGGGACGTGGTGGTGGCAGAGGCAGAAACTGGGGGTATCGAGGTGCTGGTTATGAAGGAGGAGGCCGAGGTGGCG ATTATGAAGGCCGAGGTGGTGGATATGGCGGAGGCAGAGGTGGCTACGAAGGAGGCAGAGGTGGCTACGAAGGAGGCAGAGGTGGCTACGAAGGAGGCAG AGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGA GGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACG AAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGG CTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGA GGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAGGCCGAGGTGGCTACGAAGGAG GCCGAGGTGGCTACGAAGGAGGCCGAGGTGGATATGGAGGACGAAGAGGCGGTGGGTATGAAGGAGGCCGAGGTGGATACAGAGGAGGGAGAGGTGGTGG ATACGAAGGTGGCAACAGAGGTGATGGATACGAAGGAGGCAGAGTGACTGGATATAGCGGAGGGCGAGGCGGATACGAAGGTGACAGAGGCGATGGATAC GAAGGAAACAGAGGAGGCGGTTACGAAGGTGGCCGAGGAGGAGGGAGAGGAGGCGGCAGGAGCTATGGTCGTGGCCGAGGAAGGGGTGGTGGCCGAGGAA GGGGTGGAGGTGACAACCAAGCATGA
AA sequence Show only first row Show all	>Lus10011874 pacid=23169223 polypeptide=Lus10011874 locus=Lus10011874.g ID=Lus10011874.BGIv1.0 annot-version=v1.0 MDRYTRVEKPKPESQINENEIRITSSGPVRNYISYATSLLQDKHAKEIVLKAMGQAISKTVSIAESIKRRNPRLHQDTSISSVSITDVWEPIEEGLVPVE QTRQVSMITITLSFSELDKNSPGYQAPQAEEQSKPQYQQQQQYRQVRGPYYEDSYGGGRGHGGRGRGRGRGRNWGRGGYGYGNYQENYQGNYQGNYQRGY EENGGYSNWGRGGGRGRNWGYRGAGYEGGGRGGDYEGRGGGYGGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEG GRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGR GGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYEGGRGGYGGRRGGGYEGGRGGYRGGRGGGYEGGNRGDGYEGGRVTGYSGGRGGYEGDRGDGY EGNRGGGYEGGRGGGRGGGRSYGRGRGRGGGRGRGGGDNQA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10011874 [exp]	0	1
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10022807 [exp]	1.0	0.9073
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	3.0	0.8208
AT4G13270			Late embryogenesis abundant (L...		Lus10024264 [exp]	3.5	0.8104
AT5G60800			Heavy metal transport/detoxifi...		Lus10016133 [exp]	6.9	0.7930
AT3G49601			unknown protein		Lus10008501 [exp]	6.9	0.7665
AT3G03920			H/ACA ribonucleoprotein comple...		Lus10020289 [exp]	8.5	0.8424
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10009889 [exp]	10.4	0.7818
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10041328 [exp]	11.2	0.7933
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	11.8	0.7801
AT1G29330		ATERD2, AERD2, ...	ARABIDOPSIS THALIANA ENDOPLASM...		Lus10007314 [exp]	14.1	0.7339

Compare expression of checked genes

Lus10011874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.