Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60160 179 / 5e-49 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G60970 175 / 1e-47 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1) AT1G04120 168 / 5e-45 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G13090 155 / 9e-41 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT3G13080 153 / 6e-40 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT3G59140 148 / 2e-38 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT3G21250 146 / 1e-37 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) AT3G13100 145 / 2e-37 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT2G34660 124 / 2e-30 EST4, ATMRP2, ABCC2, AtABCC2 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) AT3G62700 122 / 2e-29 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022808 [exp] 243 / 3e-75 AT3G60160 504 / 7e-169 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10018027 [exp] 241 / 6e-70 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10042023 [exp] 237 / 1e-68 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10022858 [exp] 166 / 2e-44 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10024965 [exp] 165 / 6e-44 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10013201 [exp] 162 / 7e-43 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10027567 [exp] 145 / 2e-37 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10039320 [exp] 145 / 3e-37 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10004896 [exp] 145 / 3e-37 AT3G21250 1727 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G180100 [exp] 204 / 1e-57 AT3G60160 1930 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Potri.018G149700 [exp] 174 / 4e-47 AT3G13080 1168 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197200 [exp] 164 / 7e-44 AT3G13080 1832 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124606 [exp] 164 / 7e-44 AT3G13080 1830 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197101 [exp] 162 / 3e-43 AT3G13080 1862 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G198401 [exp] 162 / 4e-43 AT3G13080 1827 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T125806 [exp] 162 / 4e-43 AT3G13080 1826 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124506 [exp] 161 / 6e-43 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124406 [exp] 161 / 8e-43 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.010G055200 [exp] 160 / 1e-42 AT3G13080 1227 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10011875 pacid=23169225 polypeptide=Lus10011875 locus=Lus10011875.g ID=Lus10011875.BGIv1.0 annot-version=v1.0 ATGCAGATTTTTCACTGGCTCGTCAAGGTTGCACATGATCAAGCCACAGAAACCCATAACCCGAAGAAATTAGCCAACAGTAACACTAACAAAAGTAAAG AGCAGGAGATAGTCTTGTTCCGAAACTGCGGGAGGCAGAGGAGAGGCAGAGGAGCTAAGAAGGAGAAGAAAACTTGTGGTTCAAGAAACTACTACGTCAG CAACCCGTTTGCATTTCTGTGCAGACGAGATGTTGCCAAGGATTGCTTCTACAGCACGCTTGATCTTAAAGCTGTCGGCGGAGATGATTACTCTAACCGT AGAGAGCGGTGGAGGAAGTACATGAAGACGATGAAGAAGAAGAAGCAGCAAGAGGAGAAGAAAGAAGAGGAATTAGTTGGTGGTAGTCATCATGTGGGTA AAAAGGTTCTGCCCATCGCCGGAGACCGTACTCCGACGACCGGTCAACGGAGATATGCGAAAGGGGAAGAAAAACCGAGAGGGGTTTCCAGAATGAAGGA GCTTGTTAGATGGGCTGCTGGTGCCAAGTCTCACAAGAAGGCAAAGTTCCTCAGCCACAAGTCTCCACTATCCACGGCTGCTTCTTCTTCTTCTTCTTCT TCTTCTTCTTCTTCCTCTTCTTCGTCTGTTGATGGTGGCCGTTGTAGCAGGAAAGGCAACTGGATCACAACTGATTCTGAATGTGAGTTTATAACTTGTT ACTCTGCTTCAGCTCAAAAGTTGCATATGCACATATGCAGAGCTGAGAACAAGATGATTTGTGTAGAAAGAGTGTTCCAGTACACGAAAATAAAAGGCGA AGAATCACCCGTTGCGATTGAAGAGTGCAGACCACCACCAGCTAACTGGCCCGAGATAGGAACTATTTGTTTCAAAGACTTGCAGATTCGATATGCGGAG CATTTGTCATTGGTTTTGAAGAACTTAAGCTGCACTTTCCCGGGGAGAAAAAAAATCGGGGTGGTTGGGAGGACAGGGAGCGGGAAGTCGACTTTAACAC AGGCGTTGTTTAGAATGGTACAAGTGCGAGAAGGGGGCATAATTATCGACGGAGTTGACATTTCGAAGATCAGACTCCGCGACTTGAGATCCAGGCTGAG CATCATCCCCCAAGACCCGACCATGTTTGAAGGTACAGTTAGAGAGAACCTCGACCCATTAGGCCACTACTCAGACTCACAAATTAAAATTGTCACGCGG AATAATTTGGTCATGGACCAAAATGCAGGCATTGGTGAAATGCCAGGTTGGGAAGTTGGTGAGGGAGAAATATGGGAAGCTGGACGGTACTGTGACTGA
AA sequence Show only first row Show all	>Lus10011875 pacid=23169225 polypeptide=Lus10011875 locus=Lus10011875.g ID=Lus10011875.BGIv1.0 annot-version=v1.0 MQIFHWLVKVAHDQATETHNPKKLANSNTNKSKEQEIVLFRNCGRQRRGRGAKKEKKTCGSRNYYVSNPFAFLCRRDVAKDCFYSTLDLKAVGGDDYSNR RERWRKYMKTMKKKKQQEEKKEEELVGGSHHVGKKVLPIAGDRTPTTGQRRYAKGEEKPRGVSRMKELVRWAAGAKSHKKAKFLSHKSPLSTAASSSSSS SSSSSSSSSVDGGRCSRKGNWITTDSECEFITCYSASAQKLHMHICRAENKMICVERVFQYTKIKGEESPVAIEECRPPPANWPEIGTICFKDLQIRYAE HLSLVLKNLSCTFPGRKKIGVVGRTGSGKSTLTQALFRMVQVREGGIIIDGVDISKIRLRDLRSRLSIIPQDPTMFEGTVRENLDPLGHYSDSQIKIVTR NNLVMDQNAGIGEMPGWEVGEGEIWEAGRYCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10011875 [exp]	0	1
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Lus10009427 [exp]	2.0	0.9483
AT4G31680	B3	REM8	Transcriptional factor B3 fami...		Lus10010080 [exp]	2.0	0.9179
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Lus10011826 [exp]	3.0	0.9119
AT5G43350		PHT1;1, ATPT1	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10021191 [exp]	3.9	0.8942
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10029360 [exp]	5.5	0.8930
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10024584 [exp]	8.0	0.8965
AT5G14130			Peroxidase superfamily protein...		Lus10012540 [exp]	8.5	0.8192
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10038923 [exp]	11.2	0.8637
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10007640 [exp]	14.7	0.8895
AT2G39040			Peroxidase superfamily protein...		Lus10041250 [exp]	15.5	0.8588

Compare expression of checked genes

Lus10011875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.