Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24740 298 / 1e-98 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G68140 153 / 6e-43 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT4G31410 149 / 2e-41 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT4G08460 130 / 5e-35 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT1G77770 129 / 2e-34 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT3G25910 130 / 4e-34 Protein of unknown function (DUF1644) (.1) AT1G15430 86 / 1e-18 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G80220 79 / 1e-16 Protein of unknown function (DUF1644) (.1) AT2G26050 50 / 1e-06 Protein of unknown function (DUF1644) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022809 [exp] 547 / 0 AT3G24740 351 / 1e-120 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10020151 [exp] 161 / 3e-46 AT4G31410 363 / 1e-126 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10026950 [exp] 162 / 4e-46 AT4G31410 363 / 2e-126 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10025356 [exp] 158 / 2e-45 AT1G68140 282 / 3e-95 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10020957 [exp] 159 / 4e-45 AT1G68140 309 / 1e-104 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10004940 [exp] 159 / 8e-45 AT1G68140 319 / 4e-108 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10019436 [exp] 150 / 1e-41 AT3G25910 277 / 3e-91 Protein of unknown function (DUF1644) (.1) Lus10043292 [exp] 149 / 4e-41 AT3G25910 282 / 2e-93 Protein of unknown function (DUF1644) (.1) Lus10009772 [exp] 140 / 1e-38 AT4G08460 256 / 3e-85 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216600 [exp] 351 / 5e-119 AT3G24740 334 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.001G208800 [exp] 162 / 2e-46 AT1G68140 312 / 6e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.003G021800 [exp] 159 / 1e-44 AT1G68140 315 / 2e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.018G070500 [exp] 155 / 2e-43 AT3G25910 246 / 2e-79 Protein of unknown function (DUF1644) (.1) Potri.018G006400 [exp] 154 / 3e-43 AT4G31410 331 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.006G275400 [exp] 153 / 5e-43 AT4G31410 311 / 4e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.006G154300 [exp] 147 / 2e-40 AT3G25910 152 / 8e-43 Protein of unknown function (DUF1644) (.1) Potri.002G088700 [exp] 143 / 5e-39 AT4G08460 245 / 2e-80 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.003G060800 [exp] 136 / 2e-35 AT3G25910 188 / 3e-55 Protein of unknown function (DUF1644) (.1) Potri.005G172300 [exp] 121 / 4e-31 AT4G08460 219 / 2e-70 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF07800 [flax] [poplar] DUF1644 Protein of unknown function (DUF1644)
Representative CDS sequence Show only first row Show all	>Lus10011876 pacid=23169193 polypeptide=Lus10011876 locus=Lus10011876.g ID=Lus10011876.BGIv1.0 annot-version=v1.0 ATGACTGGTGTGAAAAGAAGGCTGTATTCTGATTCTGATATGCATGCCCTGCACAAAGAACTGGAAGAGGTTTCATGTCCCATTTGCATGGACTATCCAC ATAATGCTGTCCTCCTCCTATGCAGCTCCCATGACAAGGGCTGCAAATCTTACATTTGTGATACCAGTTATAGGCATTCGAATTGCTTGGATAGATTTAA GAAGTTACAGGAGAATCCTAGGAATGCAGCAACTTTTCCCACTTCTTTAACCGTCAACGCTTCTACTTCTGATACTAGCTTAACTTTGGGAACCAATGCC ATTGATGTCAATGAAGGTCAGAGCTTGAACAATGACTCGACGGGATCCGGATTCAGTCTGAAATGTCCGCTGTGTCGTGGAGCCGTATTAGGATGGGAAG TTGTGGAGGAGGCGAGAAACTATCTAAACTCAAAGAGGCGAAGCTGCTCTCGAGAATCATGTTCGTACTCTGGCAACTACCAGGAGCTTCGTAGGCACGC GAGAAGGATCCACCCAACAACCCGACCATCAGACATCGATCCATCCCGGGAACGAGCTTGGAGGTCGATCGAACGAAGGAGAGAGTATGGCGATATTGTC AGTGCGGTTCGTTCGGCCATTCCCGGTGCTGTTGTCGTTGGAGATTACGTGATCGAGAATGGAGCTGAAAGGGGGGATCGAGGAGGAGATGTTAATCCGC CATGGTGGACTACTTTCTTTCTGTTTCAGATGATGGGGTCAGTGGATGGTGGTGATCAGAGGGCTCGTTCGAGGGCGGCTTGGACTAGGCATCGCAGGTC TTCATCTGGAGCTGGTCAAGGTCAACCACCTGAGCGAAGATTCCTATGGGGTGAGAATCTGTTGGGTCTGCAGGATGAAGATGATGACGATGCAGATGAT GGCGACGTGCGTATATTGAGCGATGCTGGTGAAGAAGATGCATCTCCGGTACCGAGACGGCGTAGGCGTTTGTCTCGGACAAGGACAAACTGTGCTGGCC AAGGATCAGAGCTGAGCATCGGTCACCGTGGTCATTCCATTCTCGCTTCTCGCCTTAGTGATATAGATTTGTTCTTTTCTGAAGCACAAAATCAAGGAGA CGATCAGAAACTGGCCACGGTGACGATCTGTGAGCTAAACAGTGTGGAAGGTATATGTTATGCTTATGACCCCACTGGTGCTGTATTTAATGGAATGATG GAACTCTTGGTAGGAAATTGCAGTACTGAGTCAGATCCTGTTAGGTCTGTTTCATCCACAAACACGAAAACCATGTAA
AA sequence Show only first row Show all	>Lus10011876 pacid=23169193 polypeptide=Lus10011876 locus=Lus10011876.g ID=Lus10011876.BGIv1.0 annot-version=v1.0 MTGVKRRLYSDSDMHALHKELEEVSCPICMDYPHNAVLLLCSSHDKGCKSYICDTSYRHSNCLDRFKKLQENPRNAATFPTSLTVNASTSDTSLTLGTNA IDVNEGQSLNNDSTGSGFSLKCPLCRGAVLGWEVVEEARNYLNSKRRSCSRESCSYSGNYQELRRHARRIHPTTRPSDIDPSRERAWRSIERRREYGDIV SAVRSAIPGAVVVGDYVIENGAERGDRGGDVNPPWWTTFFLFQMMGSVDGGDQRARSRAAWTRHRRSSSGAGQGQPPERRFLWGENLLGLQDEDDDDADD GDVRILSDAGEEDASPVPRRRRRLSRTRTNCAGQGSELSIGHRGHSILASRLSDIDLFFSEAQNQGDDQKLATVTICELNSVEGICYAYDPTGAVFNGMM ELLVGNCSTESDPVRSVSSTNTKTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24740			Protein of unknown function (D...		Lus10011876 [exp]	0	1
AT3G24740			Protein of unknown function (D...		Lus10022809 [exp]	1.0	0.9125
AT3G26100			Regulator of chromosome conden...		Lus10006455 [exp]	1.4	0.8607
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10015121 [exp]	2.4	0.8569
AT3G26100			Regulator of chromosome conden...		Lus10011399 [exp]	3.0	0.7903
AT5G04460			RING/U-box superfamily protein...		Lus10028827 [exp]	4.2	0.8049
AT3G03890			FMN binding (.1.2)		Lus10013617 [exp]	10.7	0.8111
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	11.1	0.8197
AT5G38895			RING/U-box superfamily protein...		Lus10034367 [exp]	13.5	0.7817
AT5G38900			Thioredoxin superfamily protei...		Lus10005083 [exp]	16.6	0.7836
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	18.0	0.7825

Compare expression of checked genes

Lus10011876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.